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Accession: PRJNA981469 ID: 981469

Characterization of carbapenemase and ESBL-producing gram-negative bacilli isolated from patients with urinary tract and bloodstream infections

The goals of this study were to use whole genome sequencing to identify the ESBLs, carbapenemases, and other beta-lactamases in gram-negative bacilli obtained from patients with urinary tract infections and bloodstream infections in the United States, to compare the resistance determinants in the organisms from the two specimen types, and to investigate emerging mechanisms of beta-lactam resistance.
AccessionPRJNA981469
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsTickler IA et al., "Characterization of Carbapenemase- and ESBL-Producing Gram-Negative Bacilli Isolated from Patients with Urinary Tract and Bloodstream Infections.", Antibiotics (Basel), 2023 Aug 30;12(9)
SubmissionRegistration date: 8-Jun-2023
Cepheid
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)262
Publications
PubMed1
PMC1
Other datasets
BioSample262
Assembly262
Assembly details:
Assembly levelNumber of Assemblies
231
31
262
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_036235315.1ScaffoldJAZBGL000000000SAMN35539567
17181
GCA_036234735.1ScaffoldJAZBFJ000000000SAMN35539788
17627
GCA_036234715.1ScaffoldJAZBFH000000000SAMN35539824
17738
GCA_036234695.1ScaffoldJAZBFG000000000SAMN35539851
17816
GCA_036235215.1ScaffoldJAZBGH000000000SAMN35539610
17307
GCA_036235225.1ScaffoldJAZBGD000000000SAMN35539631
17328
GCA_036234655.1ScaffoldJAZBFD000000000SAMN35539881
17846
GCA_036234635.1ScaffoldJAZBFE000000000SAMN35539879
17844
GCA_036235285.1ScaffoldJAZBGJ000000000SAMN35539593
17208
GCA_036235265.1ScaffoldJAZBGK000000000SAMN35539579
17193
GCA_036235175.1ScaffoldJAZBGG000000000SAMN35539611
17308
GCA_036235155.1ScaffoldJAZBGE000000000SAMN35539620
17317
GCA_036235135.1ScaffoldJAZBGC000000000SAMN35539658
17437
GCA_036235115.1ScaffoldJAZBGB000000000SAMN35539661
17440
GCA_036235095.1ContigJAZBFY000000000SAMN35539692
17526
GCA_036235335.1ScaffoldJAZBGM000000000SAMN35539566
17180
GCA_036235055.1ScaffoldJAZBFZ000000000SAMN35539691
17525
GCA_036235035.1ScaffoldJAZBFX000000000SAMN35539695
17529
GCA_036235015.1ScaffoldJAZBFT000000000SAMN35539715
17550
GCA_036234995.1ScaffoldJAZBFU000000000SAMN35539714
17549
GCA_036234975.1ContigJAZBFW000000000SAMN35539699
17534
GCA_036234955.1ScaffoldJAZBFV000000000SAMN35539701
17536
GCA_036234935.1ScaffoldJAZBFS000000000SAMN35539724
17559
GCA_036234915.1ScaffoldJAZBFP000000000SAMN35539761
17600
GCA_036234895.1ContigJAZBFQ000000000SAMN35539758
17597
GCA_036234875.1ScaffoldJAZBFR000000000SAMN35539736
17571
GCA_036234855.1ScaffoldJAZBFO000000000SAMN35539764
17603
GCA_036234835.1ScaffoldJAZBFN000000000SAMN35539770
17609
GCA_036234815.1ScaffoldJAZBFM000000000SAMN35539777
17616
GCA_036234795.1ScaffoldJAZBFL000000000SAMN35539779
17618
GCA_036234775.1ScaffoldJAZBFI000000000SAMN35539803
17714
GCA_036234755.1ScaffoldJAZBFK000000000SAMN35539784
17623
GCA_036235255.1ScaffoldJAZBGI000000000SAMN35539602
17246
GCA_036235075.1ScaffoldJAZBGA000000000SAMN35539682
17461
GCA_036234675.1ContigJAZBFF000000000SAMN35539860
17825
GCA_036235185.1ScaffoldJAZBGF000000000SAMN35539613
17310
GCA_030509705.1ScaffoldJAULJC000000000SAMN35539558
17172
GCA_030509635.1ScaffoldJAULJB000000000SAMN35539561
17175
GCA_030509615.1ScaffoldJAULIY000000000SAMN35539570
17184
GCA_030509595.1ScaffoldJAULIZ000000000SAMN35539569
17183
GCA_030509575.1ScaffoldJAULJA000000000SAMN35539564
17178
GCA_030509565.1ScaffoldJAULIX000000000SAMN35539572
17186
GCA_030509545.1ScaffoldJAULIW000000000SAMN35539573
17187
GCA_030509495.1ScaffoldJAULIU000000000SAMN35539580
17194
GCA_030509485.1ScaffoldJAULIS000000000SAMN35539587
17201
GCA_030509475.1ScaffoldJAULIT000000000SAMN35539584
17198
GCA_030509465.1ScaffoldJAULIV000000000SAMN35539578
17192
GCA_030507555.1ScaffoldJAULEZ000000000SAMN35539836
17750
GCA_030507545.1ScaffoldJAULFA000000000SAMN35539819
17733
GCA_030507525.1ContigJAULEY000000000SAMN35539837
17751
GCA_030507495.1ScaffoldJAULEX000000000SAMN35539841
17755
GCA_030507465.1ScaffoldJAULET000000000SAMN35539846
17811
GCA_030507445.1ScaffoldJAULEW000000000SAMN35539843
17808
GCA_030507435.1ScaffoldJAULEU000000000SAMN35539845
17810
GCA_030507425.1ContigJAULEV000000000SAMN35539844
17809
GCA_030507705.1ScaffoldJAULFH000000000SAMN35539794
17638
GCA_030507685.1ContigJAULFG000000000SAMN35539802
17713
GCA_030507665.1ScaffoldJAULFE000000000SAMN35539813
17727
GCA_030507625.1ScaffoldJAULFF000000000SAMN35539811
17722
GCA_030507635.1ContigJAULFD000000000SAMN35539814
17728
GCA_030507395.1ScaffoldJAULES000000000SAMN35539848
17813
GCA_030507365.1ScaffoldJAULEP000000000SAMN35539853
17818
GCA_030507355.1ScaffoldJAULER000000000SAMN35539849
17814
GCA_030507345.1ContigJAULEQ000000000SAMN35539852
17817
GCA_030507585.1ScaffoldJAULFB000000000SAMN35539817
17731
GCA_030507595.1ScaffoldJAULFC000000000SAMN35539816
17730
GCA_030507325.1ScaffoldJAULEO000000000SAMN35539854
17819
GCA_030507295.1ScaffoldJAULEM000000000SAMN35539856
17821
GCA_030507285.1ContigJAULEN000000000SAMN35539855
17820
GCA_030507245.1ScaffoldJAULEL000000000SAMN35539857
17822
GCA_030507255.1ScaffoldJAULEK000000000SAMN35539858
17823
GCA_030507225.1ScaffoldJAULEJ000000000SAMN35539859
17824
GCA_030507205.1ScaffoldJAULEI000000000SAMN35539861
17826
GCA_030507165.1ScaffoldJAULEH000000000SAMN35539862
17827
GCA_030507155.1ScaffoldJAULEG000000000SAMN35539863
17828
GCA_030507945.1ScaffoldJAULFT000000000SAMN35539766
17605
GCA_030507925.1ScaffoldJAULFS000000000SAMN35539771
17610
GCA_030507895.1ContigJAULFR000000000SAMN35539772
17611
GCA_030507885.1ScaffoldJAULFP000000000SAMN35539774
17613
GCA_030507845.1ContigJAULFQ000000000SAMN35539773
17612
GCA_030507855.1ScaffoldJAULFN000000000SAMN35539781
17620
GCA_030507825.1ScaffoldJAULFO000000000SAMN35539778
17617
GCA_030507805.1ScaffoldJAULFI000000000SAMN35539793
17637
GCA_030507785.1ScaffoldJAULFM000000000SAMN35539785
17624
GCA_030507735.1ScaffoldJAULFK000000000SAMN35539787
17626
GCA_030507745.1ScaffoldJAULFL000000000SAMN35539786
17625
GCA_030507725.1ScaffoldJAULFJ000000000SAMN35539789
17628
GCA_030508005.1ScaffoldJAULFW000000000SAMN35539762
17601
GCA_030507985.1ScaffoldJAULFV000000000SAMN35539763
17602
GCA_030507965.1ScaffoldJAULFU000000000SAMN35539765
17604
GCA_030508245.1ScaffoldJAULGK000000000SAMN35539738
17573
GCA_030508225.1ScaffoldJAULGJ000000000SAMN35539739
17574
GCA_030508405.1ContigJAULGQ000000000SAMN35539725
17560
GCA_030508205.1ScaffoldJAULGI000000000SAMN35539740
17575
GCA_030508185.1ScaffoldJAULGH000000000SAMN35539741
17576
GCA_030508155.1ScaffoldJAULGE000000000SAMN35539748
17583
GCA_030508145.1ScaffoldJAULGD000000000SAMN35539749
17584
GCA_030508125.1ScaffoldJAULGC000000000SAMN35539750
17585
GCA_030508105.1ContigJAULFZ000000000SAMN35539753
17588
GCA_030508085.1ScaffoldJAULGB000000000SAMN35539751
17586
GCA_030508065.1ScaffoldJAULGA000000000SAMN35539752
17587
GCA_030508045.1ContigJAULFY000000000SAMN35539754
17589
GCA_030508025.1ScaffoldJAULFX000000000SAMN35539755
17590
GCA_030509105.1ScaffoldJAULIA000000000SAMN35539648
17346
GCA_030509085.1ScaffoldJAULIC000000000SAMN35539644
17342
GCA_030509095.1ScaffoldJAULHY000000000SAMN35539650
17425
GCA_030509005.1ContigJAULHW000000000SAMN35539653
17428
GCA_030508995.1ScaffoldJAULHV000000000SAMN35539654
17429
GCA_030509015.1ScaffoldJAULHU000000000SAMN35539655
17430
GCA_030509025.1ScaffoldJAULHX000000000SAMN35539651
17426
GCA_030508985.1ScaffoldJAULHQ000000000SAMN35539668
17447
GCA_030508965.1ScaffoldJAULHT000000000SAMN35539665
17444
GCA_030508945.1ScaffoldJAULHS000000000SAMN35539666
17445
GCA_030508905.1ScaffoldJAULHP000000000SAMN35539672
17451
GCA_030508915.1ScaffoldJAULHR000000000SAMN35539667
17446
GCA_030508865.1ContigJAULHN000000000SAMN35539675
17454
GCA_030508875.1ScaffoldJAULHO000000000SAMN35539673
17452
GCA_030509445.1ScaffoldJAULIR000000000SAMN35539588
17202
GCA_030509405.1ScaffoldJAULIP000000000SAMN35539590
17205
GCA_030509415.1ScaffoldJAULIQ000000000SAMN35539589
17204
GCA_030509365.1ScaffoldJAULIN000000000SAMN35539594
17209
GCA_030509375.1ContigJAULIO000000000SAMN35539592
17207
GCA_030509325.1ContigJAULIM000000000SAMN35539595
17210
GCA_030509315.1ScaffoldJAULIL000000000SAMN35539596
17211
GCA_030509305.1ScaffoldJAULIJ000000000SAMN35539599
17243
GCA_030509275.1ScaffoldJAULII000000000SAMN35539600
17244
GCA_030509265.1ScaffoldJAULIK000000000SAMN35539597
17212
GCA_030509245.1ScaffoldJAULIG000000000SAMN35539612
17309
GCA_030509175.1ContigJAULID000000000SAMN35539622
17319
GCA_030509195.1ScaffoldJAULIE000000000SAMN35539621
17318
GCA_030509165.1ScaffoldJAULIF000000000SAMN35539615
17312
GCA_030509145.1ScaffoldJAULIB000000000SAMN35539645
17343
GCA_030508845.1ContigJAULHK000000000SAMN35539679
17458
GCA_030508825.1ScaffoldJAULHL000000000SAMN35539678
17457
GCA_030508805.1ScaffoldJAULHM000000000SAMN35539676
17455
GCA_030508785.1ScaffoldJAULHG000000000SAMN35539685
17464
GCA_030508765.1ScaffoldJAULHF000000000SAMN35539686
17520
GCA_030508725.1ScaffoldJAULHH000000000SAMN35539684
17463
GCA_030508735.1ScaffoldJAULHJ000000000SAMN35539680
17459
GCA_030508705.1ScaffoldJAULHI000000000SAMN35539683
17462
GCA_030508665.1ScaffoldJAULHE000000000SAMN35539688
17522
GCA_030508655.1ScaffoldJAULHD000000000SAMN35539702
17537
GCA_030508635.1ScaffoldJAULHC000000000SAMN35539703
17538
GCA_030508625.1ScaffoldJAULHB000000000SAMN35539704
17539
GCA_030508585.1ScaffoldJAULGZ000000000SAMN35539709
17544
GCA_030508555.1ScaffoldJAULHA000000000SAMN35539708
17543
GCA_030508535.1ScaffoldJAULGW000000000SAMN35539717
17552
GCA_030508525.1ScaffoldJAULGY000000000SAMN35539710
17545
GCA_030508605.1ScaffoldJAULGX000000000SAMN35539711
17546
GCA_030508495.1ScaffoldJAULGR000000000SAMN35539723
17558
GCA_030508485.1ContigJAULGU000000000SAMN35539720
17555
GCA_030508465.1ScaffoldJAULGV000000000SAMN35539719
17554
GCA_030508435.1ScaffoldJAULGS000000000SAMN35539722
17557
GCA_030508425.1ScaffoldJAULGT000000000SAMN35539721
17556
GCA_030508355.1ScaffoldJAULGO000000000SAMN35539731
17566
GCA_030508345.1ScaffoldJAULGN000000000SAMN35539732
17567
GCA_030508365.1ScaffoldJAULGP000000000SAMN35539729
17564
GCA_030508325.1ScaffoldJAULGM000000000SAMN35539733
17568
GCA_030508305.1ScaffoldJAULGL000000000SAMN35539734
17569
GCA_030508285.1ScaffoldJAULGF000000000SAMN35539746
17581
GCA_030508255.1ScaffoldJAULGG000000000SAMN35539745
17580
GCA_030506905.1ScaffoldJAULDU000000000SAMN35539892
17857
GCA_030506875.1ScaffoldJAULDS000000000SAMN35539895
17860
GCA_030506855.1ScaffoldJAULDP000000000SAMN35539901
17870
GCA_030506825.1ScaffoldJAULDR000000000SAMN35539897
17866
GCA_030506835.1ScaffoldJAULDQ000000000SAMN35539899
17868
GCA_030506805.1ScaffoldJAULDO000000000SAMN35539902
17891
GCA_030507085.1ScaffoldJAULEB000000000SAMN35539874
17839
GCA_030507065.1ScaffoldJAULEC000000000SAMN35539869
17834
GCA_030507015.1ScaffoldJAULEA000000000SAMN35539882
17847
GCA_030507025.1ScaffoldJAULDZ000000000SAMN35539883
17848
GCA_030507005.1ScaffoldJAULDY000000000SAMN35539884
17849
GCA_030506985.1ScaffoldJAULDX000000000SAMN35539885
17850
GCA_030506935.1ScaffoldJAULDV000000000SAMN35539891
17856
GCA_030506965.1ScaffoldJAULDT000000000SAMN35539893
17858
GCA_030506925.1ScaffoldJAULDW000000000SAMN35539889
17854
GCA_030506655.1ScaffoldJAULDG000000000SAMN35539918
17978
GCA_030506645.1ScaffoldJAULDL000000000SAMN35539906
17896
GCA_030506765.1ScaffoldJAULDK000000000SAMN35539907
17897
GCA_030506755.1ScaffoldJAULDM000000000SAMN35539905
17895
GCA_030506745.1ScaffoldJAULDN000000000SAMN35539904
17894
GCA_030506725.1ScaffoldJAULDJ000000000SAMN35539908
17898
GCA_030507125.1ContigJAULED000000000SAMN35539866
17831
GCA_030507105.1ContigJAULEE000000000SAMN35539865
17830
GCA_030506705.1ScaffoldJAULDH000000000SAMN35539911
17971
GCA_030515305.1ScaffoldJAULIH000000000SAMN35539608
17305
GCA_038398485.1ScaffoldJBBXLY000000000SAMN35539559
17173
GCA_038398405.1ScaffoldJBBXLZ000000000SAMN35539586
17200
GCA_038398385.1ScaffoldJBBXMA000000000SAMN35539646
17344
GCA_038398365.1ScaffoldJBBXMB000000000SAMN35539705
17540
GCA_038398345.1ScaffoldJBBXMJ000000000SAMN35539652
17427
GCA_038398325.1ScaffoldJBBXMK000000000SAMN35539664
17443
GCA_038398305.1ScaffoldJBBXML000000000SAMN35539706
17541
GCA_038398285.1ScaffoldJBBXMC000000000SAMN35539756
17595
GCA_038398265.1ScaffoldJBBXMD000000000SAMN35539780
17619
GCA_038398245.1ScaffoldJBBXKL000000000SAMN35539795
17706
GCA_038398225.1ScaffoldJBBXME000000000SAMN35539796
17707
GCA_038398205.1ScaffoldJBBXMF000000000SAMN35539826
17740
GCA_038398185.1ScaffoldJBBXMG000000000SAMN35539847
17812
GCA_038398165.1ScaffoldJBBXMH000000000SAMN35539872
17837
GCA_038398145.1ContigJBBXMM000000000SAMN35539867
17832
GCA_038398125.1ScaffoldJBBXKM000000000SAMN35539875
17840
GCA_038398105.1ScaffoldJBBXMI000000000SAMN35539914
17974
GCA_038398085.1ScaffoldJBBXMN000000000SAMN35539916
17976
GCA_030678855.1ScaffoldJAUUIY000000000SAMN35539565
17179
GCA_030678835.1ScaffoldJAUUIZ000000000SAMN35539571
17185
GCA_030678805.1ScaffoldJAUUJA000000000SAMN35539577
17191
GCA_030678795.1ScaffoldJAUUJE000000000SAMN35539623
17320
GCA_030674925.1ScaffoldJAUULA000000000SAMN35539917
17977
GCA_030675055.1ScaffoldJAUUKU000000000SAMN35539880
17845
GCA_030675035.1ScaffoldJAUUKZ000000000SAMN35539913
17973
GCA_030675005.1ScaffoldJAUUKW000000000SAMN35539887
17852
GCA_030674995.1ScaffoldJAUUKV000000000SAMN35539886
17851
GCA_030674965.1ScaffoldJAUUKX000000000SAMN35539890
17855
GCA_030674955.1ScaffoldJAUUKY000000000SAMN35539896
17865
GCA_030675795.1ScaffoldJAUUJI000000000SAMN35539630
17327
GCA_030675785.1ScaffoldJAUUJJ000000000SAMN35539634
17331
GCA_030675775.1ScaffoldJAUUJL000000000SAMN35539637
17334
GCA_030675755.1ScaffoldJAUUJK000000000SAMN35539635
17332
GCA_030675735.1ScaffoldJAUUJM000000000SAMN35539639
17336
GCA_030675715.1ScaffoldJAUUJN000000000SAMN35539640
17337
GCA_030675675.1ScaffoldJAUUJP000000000SAMN35539647
17345
GCA_030675665.1ContigJAUUJO000000000SAMN35539643
17340
GCA_030675655.1ScaffoldJAUUJQ000000000SAMN35539660
17439
GCA_030675635.1ContigJAUUJR000000000SAMN35539663
17442
GCA_030675615.1ScaffoldJAUUJS000000000SAMN35539670
17449
GCA_030675575.1ScaffoldJAUUJT000000000SAMN35539671
17450
GCA_030675585.1ScaffoldJAUUJU000000000SAMN35539687
17521
GCA_030675545.1ScaffoldJAUUJX000000000SAMN35539712
17547
GCA_030675835.1ContigJAUUJH000000000SAMN35539628
17325
GCA_030675495.1ScaffoldJAUUJY000000000SAMN35539713
17548
GCA_030675475.1ScaffoldJAUUJZ000000000SAMN35539718
17553
GCA_030675455.1ScaffoldJAUUKA000000000SAMN35539726
17561
GCA_030675415.1ScaffoldJAUUKE000000000SAMN35539744
17579
GCA_030675425.1ScaffoldJAUUKB000000000SAMN35539737
17572
GCA_030675395.1ScaffoldJAUUKC000000000SAMN35539742
17577
GCA_030675375.1ScaffoldJAUUKD000000000SAMN35539743
17578
GCA_030675355.1ScaffoldJAUUKF000000000SAMN35539747
17582
GCA_030675335.1ScaffoldJAUUKG000000000SAMN35539801
17712
GCA_030675275.1ScaffoldJAUUKI000000000SAMN35539805
17716
GCA_030675285.1ContigJAUUKH000000000SAMN35539804
17715
GCA_030675235.1ScaffoldJAUUKL000000000SAMN35539818
17732
GCA_030675255.1ContigJAUUKK000000000SAMN35539815
17729
GCA_030675195.1ScaffoldJAUUKS000000000SAMN35539868
17833
GCA_030675515.1ContigJAUUJW000000000SAMN35539700
17535
GCA_030675315.1ScaffoldJAUUKJ000000000SAMN35539812
17726
GCA_030675175.1ScaffoldJAUUKO000000000SAMN35539822
17736
GCA_030675185.1ScaffoldJAUUKN000000000SAMN35539821
17735
GCA_030675155.1ScaffoldJAUUKM000000000SAMN35539820
17734
GCA_030675135.1ScaffoldJAUUKP000000000SAMN35539827
17741
GCA_030675105.1ScaffoldJAUUKQ000000000SAMN35539829
17743
GCA_030675075.1ScaffoldJAUUKT000000000SAMN35539877
17842
GCA_030675085.1ScaffoldJAUUKR000000000SAMN35539838
17752
GCA_030675935.1ScaffoldJAUUJB000000000SAMN35539609
17306
GCA_030675855.1ScaffoldJAUUJG000000000SAMN35539626
17323
GCA_030675895.1ScaffoldJAUUJC000000000SAMN35539614
17311
GCA_030675885.1ScaffoldJAUUJD000000000SAMN35539616
17313
GCA_030506685.1ScaffoldJAULDI000000000SAMN35539909
17899
GCA_030675875.1ScaffoldJAUUJF000000000SAMN35539625
17322
GCA_030675535.1ScaffoldJAUUJV000000000SAMN35539697
17531
GCA_030507145.1ScaffoldJAULEF000000000SAMN35539864
17829
GCA_030509205.1ScaffoldJAULHZ000000000SAMN35539649
17424

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