ID 984334 - BioProject

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Accession: PRJNA984334 ID: 984334

Fiber supplementation protects from antibiotic-induced gut microbiome dysbiosis by modulating gut redox potential

Unassembled metagenomic and metatranscriptomic data from shot-gun seqeuncing of mouse cecal samples. 16s data of mouse fecal samples.

Accession	PRJNA984334
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Penumutchu S et al., "Fiber supplementation protects from antibiotic-induced gut microbiome dysbiosis by modulating gut redox potential.", Nat Commun, 2023 Aug 24;14(1):5161
Grants	"Dietary fiber to mitigate antibiotic-induced microbiome dysbiosis: a multi-omics approach" (Grant ID R21 AT010366, National Center for Complementary and Integrative Health)
Submission	Registration date: 15-Jun-2023 Brown University
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	54
SRA Experiments	97
Publications
PubMed	1
PMC	1
Other datasets
BioSample	247
Assembly	54

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

54
54

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_031964195.1	JAVSIH000000000	SAMN36531532	bin_49	Acutalibacter sp.
GCA_031965735.1	JAVSGO000000000	SAMN36531487	bin_4	Akkermansia sp.
GCA_031964075.1	JAVSIJ000000000	SAMN36531534	bin_51	Anaerotruncus sp.
GCA_031963995.1	JAVSIM000000000	SAMN36531537	bin_54	Bacillota bacterium
GCA_031965535.1	JAVSGV000000000	SAMN36531494	bin_11	Bacillota bacterium
GCA_031965675.1	JAVSGM000000000	SAMN36531485	bin_2	Bacteroidales bacterium
GCA_031965695.1	JAVSGN000000000	SAMN36531486	bin_3	Bacteroides sp.
GCA_031965615.1	JAVSGR000000000	SAMN36531490	bin_7	Burkholderiales bacterium
GCA_031965455.1	JAVSGZ000000000	SAMN36531498	bin_15	Clostridia bacterium
GCA_031965435.1	JAVSHA000000000	SAMN36531499	bin_16	Clostridia bacterium
GCA_031965415.1	JAVSHB000000000	SAMN36531500	bin_17	Clostridia bacterium
GCA_031964655.1	JAVSHU000000000	SAMN36531519	bin_36	Clostridiaceae bacterium
GCA_031964615.1	JAVSHV000000000	SAMN36531520	bin_37	Clostridiales bacterium
GCA_031964315.1	JAVSIC000000000	SAMN36531527	bin_44	Clostridiales bacterium
GCA_031964255.1	JAVSIG000000000	SAMN36531531	bin_48	Clostridiales bacterium
GCA_031965175.1	JAVSHG000000000	SAMN36531505	bin_22	Clostridiales bacterium
GCA_031965095.1	JAVSHJ000000000	SAMN36531508	bin_25	Clostridiales bacterium
GCA_031965015.1	JAVSHK000000000	SAMN36531509	bin_26	Clostridiales bacterium
GCA_031964875.1	JAVSHO000000000	SAMN36531513	bin_30	Clostridiales bacterium
GCA_031964855.1	JAVSHQ000000000	SAMN36531515	bin_32	Clostridiales bacterium
GCA_031964775.1	JAVSHR000000000	SAMN36531516	bin_33	Clostridiales bacterium
GCA_031964695.1	JAVSHT000000000	SAMN36531518	bin_35	Clostridiales bacterium
GCA_031964675.1	JAVSHS000000000	SAMN36531517	bin_34	Clostridiales bacterium
GCA_031964495.1	JAVSHX000000000	SAMN36531522	bin_39	Clostridiales bacterium
GCA_031964475.1	JAVSHZ000000000	SAMN36531524	bin_41	Clostridiales bacterium
GCA_031964455.1	JAVSHY000000000	SAMN36531523	bin_40	Clostridiales bacterium
GCA_031964435.1	JAVSIA000000000	SAMN36531525	bin_42	Clostridiales bacterium
GCA_031965375.1	JAVSHC000000000	SAMN36531501	bin_18	Clostridiales bacterium
GCA_031965335.1	JAVSHD000000000	SAMN36531502	bin_19	Clostridiales bacterium
GCA_031965295.1	JAVSHE000000000	SAMN36531503	bin_20	Clostridiales bacterium
GCA_031964055.1	JAVSIL000000000	SAMN36531536	bin_53	Clostridiales bacterium
GCA_031964035.1	JAVSII000000000	SAMN36531533	bin_50	Clostridiales bacterium
GCA_031965465.1	JAVSGY000000000	SAMN36531497	bin_14	Clostridiales bacterium
GCA_031965635.1	JAVSGQ000000000	SAMN36531489	bin_6	Enterobacteriaceae bacterium
GCA_031965575.1	JAVSGU000000000	SAMN36531493	bin_10	Enterococcus faecium
GCA_031965515.1	JAVSGW000000000	SAMN36531495	bin_12	Erysipelotrichaceae bacterium
GCA_031965655.1	JAVSGP000000000	SAMN36531488	bin_5	Klebsiella oxytoca
GCA_031965255.1	JAVSHF000000000	SAMN36531504	bin_21	Lachnospiraceae bacterium
GCA_031965185.1	JAVSHH000000000	SAMN36531506	bin_23	Lachnospiraceae bacterium
GCA_031965155.1	JAVSHI000000000	SAMN36531507	bin_24	Lachnospiraceae bacterium
GCA_031964995.1	JAVSHL000000000	SAMN36531510	bin_27	Lachnospiraceae bacterium
GCA_031964975.1	JAVSHM000000000	SAMN36531511	bin_28	Lachnospiraceae bacterium
GCA_031964935.1	JAVSHN000000000	SAMN36531512	bin_29	Lachnospiraceae bacterium
GCA_031964835.1	JAVSHP000000000	SAMN36531514	bin_31	Lachnospiraceae bacterium
GCA_031964595.1	JAVSHW000000000	SAMN36531521	bin_38	Lachnospiraceae bacterium
GCA_031965555.1	JAVSGT000000000	SAMN36531492	bin_9	Lactobacillus johnsonii
GCA_031965595.1	JAVSGS000000000	SAMN36531491	bin_8	Lactococcus sp.
GCA_031965715.1	JAVSGL000000000	SAMN36531484	bin_1	Muribaculaceae bacterium
GCA_031964215.1	JAVSIF000000000	SAMN36531530	bin_47	Oscillibacter sp.
GCA_031964275.1	JAVSIE000000000	SAMN36531529	bin_46	Oscillibacter sp.
GCA_031964235.1	JAVSID000000000	SAMN36531528	bin_45	Oscillibacter sp.
GCA_031964015.1	JAVSIK000000000	SAMN36531535	bin_52	Oscillospiraceae bacterium
GCA_031964395.1	JAVSIB000000000	SAMN36531526	bin_43	Pseudoflavonifractor sp.
GCA_031965495.1	JAVSGX000000000	SAMN36531496	bin_13	Romboutsia ilealis

SRA Data Details

Parameter	Value
Data volume, Gbases	489
Data volume, Tbytes	0.19

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Fiber supplementation protects from antibiotic-induced gut microbiome dysbiosis by modulating gut redox potential

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