ID 1019399 - BioProject

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Accession: PRJNA1019399 ID: 1019399

Aina Informatics Lava cave microbes

Through a multi-institutional collaboration, we used Illumina and Oxford Nanopore sequencing, and free bioinformatic platforms to run a joint research-education program where students sequenced and assembled bacterial genomes using the MinION platform in the classroom, with researchers providing Illumina data. More...

Accession	PRJNA1019399
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Prescott RD et al., "Bridging Place-Based Astrobiology Education with Genomics, Including Descriptions of Three Novel Bacterial Species Isolated from Mars Analog Sites of Cultural Relevance.", Astrobiology, 2023 Dec;23(12):1348-1367
Grants	"UK Research and Innovation, Science and Technology Facilities Council (STFC)" (Grant ID ST/V000586/1, UK Research and Innovation, Science and Technology Facilities Council (STFC)) "NSF Research Experiences for Undergraduates" (Grant ID 1560491, NSF Research Experiences for Undergraduates) "Survival in extreme environments through cooperation: biofilms and looking for life on Mars" (Grant ID 1711856, NSF Postdoc Fellowship in Biology) "The role of quorum sensing in bacterial-fungal interactions on the colonization and degradation of meteorites" (Grant ID NA, NASA Postdoctoral Fellowship (NPP)) "Cooperation and adaptability in microbial mats from extreme environments: Quorum sensing and its relation to early life on Earth and elsewhere" (Grant ID 80NSSC18K1064, NASA Exobiology grant) "Edward E. Ford Foundation award to Aina Informatics" (Grant ID NA, Edward E. Ford Foundation) "Biological and Environmental Research Division Award" (Grant ID LANLF59T, Biological and Environmental Research Division Award)
Submission	Registration date: 20-Sep-2023 University of Mississippi
Related Resources	`Iolani Community Science
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	17
WGS master	4
Genomic DNA	13
Publications
PubMed	1
PMC	1
Other datasets
BioSample	13
Assembly	13

Assembly details:

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Assembly level

Number of Assemblies

8
1
4
13

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_032397745.1		1	SAMN37483212	BL16A	Bradyrhizobium prioritasuperba
GCA_032465815.1		5	SAMN37483210	BIC8F	Cupriavidus sp. BIC8F
GCA_034541955.1	JAVYJL000000000		SAMN37483217	JS3	Cyanobacteriota bacterium JS3
GCA_034541975.1	JAVYJM000000000		SAMN37483214	MT1.1	Dermacoccus abyssi
GCA_032393985.1		1	SAMN37483216	JS2	Fischerella sp. JS2
GCA_032399705.1		1	SAMN37483209	BIC5C1	Paenibacillus sp. BIC5C1
GCA_032395985.1		1	SAMN37483213	BL16E	Paraflavitalea speifideiaquila
GCA_032395385.1		1	SAMN37483218	K61	Prodigiosinella aquatilis
GCA_034541995.1	JAWDGM000000000		SAMN37483211	BIC9C	Pseudomonas sp. BIC9C
GCA_032392015.1		1	SAMN37483215	C9-3	Pseudomonas sp. C9-3
GCA_032393075.1		1	SAMN37483221	K07-23T	Rhodococcus kroppenstedtii
GCA_034541915.1	JAWDJZ000000000		SAMN37483219	SD	Sphingomonas desiccabilis
GCA_032391395.1		1	SAMN37483220	Y38-1Y	Sphingomonas sp. Y38-1Y

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