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Accession: PRJNA612438 ID: 612438

Lactobacillus plantarum genome sequencing

Comparative genomic analysis of 551 Lactobacillus plantarum isolates reveals association between genomic profiles and habitats
AccessionPRJNA612438
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 13-Mar-2020
Inner Mongolia Agricultural University
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)122
Other datasets
BioSample122
Assembly122
Assembly details:
Assembly levelNumber of Assemblies
119
3
122
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_021892425.1ScaffoldJAAVNJ000000000SAMN14372670
IMAU30162
GCA_021893125.1ScaffoldJAAVOR000000000SAMN14372636
IMAU80005
GCA_021893115.1ScaffoldJAAVOP000000000SAMN14372638
IMAU80007
GCA_021893095.1ScaffoldJAAVOS000000000SAMN14372635
IMAU70100
GCA_021893075.1ScaffoldJAAVOO000000000SAMN14372639
IMAU80009
GCA_021893055.1ScaffoldJAAVOQ000000000SAMN14372637
IMAU80006
GCA_021893025.1ScaffoldJAAVOM000000000SAMN14372641
IMAU80026
GCA_021893015.1ScaffoldJAAVON000000000SAMN14372640
IMAU80016
GCA_021892995.1ScaffoldJAAVOL000000000SAMN14372642
IMAU80038
GCA_021892975.1ScaffoldJAAVOK000000000SAMN14372643
IMAU80045
GCA_021892955.1ScaffoldJAAVOJ000000000SAMN14372644
IMAU80053
GCA_021892935.1ScaffoldJAAVOI000000000SAMN14372645
IMAU80057
GCA_021892905.1ScaffoldJAAVOH000000000SAMN14372646
IMAU80063
GCA_021892895.1ScaffoldJAAVOG000000000SAMN14372647
IMAU80100
GCA_021892855.1ScaffoldJAAVOE000000000SAMN14372649
IMAU80110
GCA_021892845.1ScaffoldJAAVOF000000000SAMN14372648
IMAU80108
GCA_021892835.1ScaffoldJAAVOD000000000SAMN14372650
IMAU80119
GCA_021892805.1ScaffoldJAAVOB000000000SAMN14372652
IMAU80128
GCA_021892795.1ScaffoldJAAVOC000000000SAMN14372651
IMAU80125
GCA_021892755.1ScaffoldJAAVNZ000000000SAMN14372654
IMAU80162
GCA_021892745.1ScaffoldJAAVOA000000000SAMN14372653
IMAU80161
GCA_021892735.1ScaffoldJAAVNY000000000SAMN14372655
IMAU80163
GCA_021892715.1ScaffoldJAAVNX000000000SAMN14372656
IMAU80169
GCA_021892695.1ScaffoldJAAVNW000000000SAMN14372657
IMAU80174
GCA_021892675.1ScaffoldJAAVNT000000000SAMN14372660
IMAU80188
GCA_021892655.1ScaffoldJAAVNV000000000SAMN14372658
IMAU80179
GCA_021892635.1ScaffoldJAAVNR000000000SAMN14372662
IMAU80297
GCA_021892615.1ScaffoldJAAVNU000000000SAMN14372659
IMAU80186
GCA_021892595.1ScaffoldJAAVNS000000000SAMN14372661
IMAU80296
GCA_021892575.1ScaffoldJAAVNQ000000000SAMN14372663
IMAU80323
GCA_021892555.1ScaffoldJAAVNP000000000SAMN14372664
IMAU80325
GCA_021892535.1ScaffoldJAAVNO000000000SAMN14372665
IMAU80441
GCA_021892485.1ScaffoldJAAVNM000000000SAMN14372667
IMAU80824
GCA_021892515.1ScaffoldJAAVNN000000000SAMN14372666
IMAU80597
GCA_021892475.1ScaffoldJAAVNL000000000SAMN14372668
IMAU80065
GCA_021892455.1ScaffoldJAAVNK000000000SAMN14372669
IMAU40082
GCA_021894875.1ScaffoldJAAVQF000000000SAMN14372596
IMAU20120
GCA_021894855.1ScaffoldJAAVQB000000000SAMN14372600
IMAU30118
GCA_021894835.1ScaffoldJAAVPU000000000SAMN14372607
IMAU40014
GCA_021894785.1ScaffoldJAAVSA000000000SAMN14372549
IMAU80032
GCA_021894795.1ScaffoldJAAVRY000000000SAMN14372551
IMAU10053
GCA_021894775.1ScaffoldJAAVRZ000000000SAMN14372550
IMAU70164
GCA_021894755.1ScaffoldJAAVRW000000000SAMN14372553
IMAU10062
GCA_021894735.1ScaffoldJAAVRX000000000SAMN14372552
IMAU10058
GCA_021894715.1ScaffoldJAAVRU000000000SAMN14372555
IMAU10114
GCA_021894685.1ScaffoldJAAVRV000000000SAMN14372554
IMAU10070
GCA_021894675.1ScaffoldJAAVRS000000000SAMN14372557
IMAU10117
GCA_021894655.1ContigJAAVRT000000000SAMN14372556
IMAU10115
GCA_021894635.1ScaffoldJAAVRR000000000SAMN14372558
IMAU10118
GCA_021894615.1ScaffoldJAAVRQ000000000SAMN14372559
IMAU10120
GCA_021894595.1ScaffoldJAAVRO000000000SAMN14372561
IMAU10124
GCA_021894565.1ScaffoldJAAVRP000000000SAMN14372560
IMAU10121
GCA_021894555.1ScaffoldJAAVRM000000000SAMN14372563
IMAU10140
GCA_021894535.1ScaffoldJAAVRN000000000SAMN14372562
IMAU10125
GCA_021894495.1ScaffoldJAAVRJ000000000SAMN14372566
IMAU10156
GCA_021894505.1ScaffoldJAAVRI000000000SAMN14372567
IMAU10216
GCA_021894475.1ScaffoldJAAVRK000000000SAMN14372565
IMAU10145
GCA_021894455.1ScaffoldJAAVRL000000000SAMN14372564
IMAU10141
GCA_021894435.1ScaffoldJAAVRH000000000SAMN14372568
IMAU10217
GCA_021894415.1ScaffoldJAAVRE000000000SAMN14372571
IMAU10235
GCA_021894355.1ScaffoldJAAVRF000000000SAMN14372570
IMAU10228
GCA_021894365.1ScaffoldJAAVRG000000000SAMN14372569
IMAU10218
GCA_021894345.1ScaffoldJAAVQW000000000SAMN14372579
IMAU10395
GCA_021894335.1ScaffoldJAAVRD000000000SAMN14372572
IMAU10236
GCA_021894315.1ScaffoldJAAVRC000000000SAMN14372573
IMAU10237
GCA_021894285.1ScaffoldJAAVRA000000000SAMN14372575
IMAU10372
GCA_021894275.1ScaffoldJAAVRB000000000SAMN14372574
IMAU10239
GCA_021894255.1ScaffoldJAAVQZ000000000SAMN14372576
IMAU10378
GCA_021894235.1ScaffoldJAAVQX000000000SAMN14372578
IMAU10382
GCA_021894215.1ScaffoldJAAVQY000000000SAMN14372577
IMAU10379
GCA_021894195.1ScaffoldJAAVQV000000000SAMN14372580
IMAU10418
GCA_021894175.1ScaffoldJAAVQU000000000SAMN14372581
IMAU10566
GCA_021894155.1ScaffoldJAAVQN000000000SAMN14372588
IMAU10591
GCA_021894135.1ScaffoldJAAVQT000000000SAMN14372582
IMAU10572
GCA_021894115.1ScaffoldJAAVQS000000000SAMN14372583
IMAU10574
GCA_021894095.1ScaffoldJAAVQR000000000SAMN14372584
IMAU10576
GCA_021894075.1ScaffoldJAAVQQ000000000SAMN14372585
IMAU10580
GCA_021894055.1ScaffoldJAAVQP000000000SAMN14372586
IMAU10585
GCA_021894025.1ScaffoldJAAVQM000000000SAMN14372589
IMAU20009
GCA_021894015.1ScaffoldJAAVQO000000000SAMN14372587
IMAU10586
GCA_021893995.1ScaffoldJAAVQK000000000SAMN14372591
IMAU20029
GCA_021893975.1ScaffoldJAAVQL000000000SAMN14372590
IMAU20013
GCA_021893955.1ScaffoldJAAVQJ000000000SAMN14372592
IMAU20063
GCA_021893925.1ScaffoldJAAVQI000000000SAMN14372593
IMAU20113
GCA_021893915.1ScaffoldJAAVQH000000000SAMN14372594
IMAU20118
GCA_021893885.1ScaffoldJAAVQG000000000SAMN14372595
IMAU20119
GCA_021893865.1ScaffoldJAAVQC000000000SAMN14372599
IMAU30116
GCA_021893855.1ScaffoldJAAVQE000000000SAMN14372597
IMAU30001
GCA_021893825.1ScaffoldJAAVQD000000000SAMN14372598
IMAU30106
GCA_021893815.1ScaffoldJAAVQA000000000SAMN14372601
IMAU30151
GCA_021893795.1ScaffoldJAAVPZ000000000SAMN14372602
IMAU40003
GCA_021893755.1ScaffoldJAAVPY000000000SAMN14372603
IMAU40005
GCA_021893765.1ScaffoldJAAVPT000000000SAMN14372608
IMAU40070
GCA_021893735.1ScaffoldJAAVPX000000000SAMN14372604
IMAU40007
GCA_021893715.1ScaffoldJAAVPV000000000SAMN14372606
IMAU40010
GCA_021893695.1ScaffoldJAAVPW000000000SAMN14372605
IMAU40009
GCA_021893675.1ScaffoldJAAVPR000000000SAMN14372610
IMAU40089
GCA_021893655.1ScaffoldJAAVPS000000000SAMN14372609
IMAU40072
GCA_021893615.1ScaffoldJAAVPP000000000SAMN14372612
IMAU40100
GCA_021893605.1ScaffoldJAAVPO000000000SAMN14372613
IMAU40116
GCA_021893595.1ScaffoldJAAVPQ000000000SAMN14372611
IMAU40090
GCA_021893575.1ScaffoldJAAVPM000000000SAMN14372615
IMAU60049
GCA_021893555.1ScaffoldJAAVPN000000000SAMN14372614
IMAU60045
GCA_021893525.1ContigJAAVPK000000000SAMN14372617
IMAU60055
GCA_021893505.1ScaffoldJAAVPJ000000000SAMN14372618
IMAU60057
GCA_021893495.1ScaffoldJAAVPL000000000SAMN14372616
IMAU60051
GCA_021893465.1ScaffoldJAAVPH000000000SAMN14372620
IMAU60171
GCA_021893455.1ScaffoldJAAVPI000000000SAMN14372619
IMAU60170
GCA_021893415.1ScaffoldJAAVPF000000000SAMN14372622
IMAU70005
GCA_021893435.1ContigJAAVPG000000000SAMN14372621
IMAU70004
GCA_021893395.1ScaffoldJAAVPE000000000SAMN14372623
IMAU70010
GCA_021893365.1ScaffoldJAAVPA000000000SAMN14372627
IMAU70087
GCA_021893355.1ScaffoldJAAVPD000000000SAMN14372624
IMAU70023
GCA_021893315.1ScaffoldJAAVOZ000000000SAMN14372628
IMAU70088
GCA_021893325.1ScaffoldJAAVPC000000000SAMN14372625
IMAU70035
GCA_021893295.1ScaffoldJAAVPB000000000SAMN14372626
IMAU70042
GCA_021893275.1ScaffoldJAAVOY000000000SAMN14372629
IMAU70089
GCA_021893225.1ScaffoldJAAVOU000000000SAMN14372633
IMAU70095
GCA_021893195.1ScaffoldJAAVOV000000000SAMN14372632
IMAU70092
GCA_021893215.1ScaffoldJAAVOW000000000SAMN14372631
IMAU70091
GCA_021893205.1ScaffoldJAAVOX000000000SAMN14372630
IMAU70090
GCA_021893175.1ScaffoldJAAVOT000000000SAMN14372634
IMAU70098

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