ID 840706 - BioProject

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Accession: PRJEB52589 ID: 840706

EMG produced TPA metagenomics assembly of PRJNA471937 data set (Pig gut metagenome Metagenomic assembly).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA471937, and was assembled with metaSPAdes v3. More...

Accession	PRJEB52589
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 20-May-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2744
WGS master	192
Publications
PubMed	1
PMC	1
Other datasets
BioSample	192
Assembly	192

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

192
192

Assembly	WGS	BioSample	Taxonomy
GCA_945498255.1	CALYWX000000000	SAMEA110310663	Candidatus Apopatosoma intestinale
GCA_945495355.1	CALYVW000000000	SAMEA110310631	Catenibacterium mitsuokai
GCA_945492575.1	CALYVC000000000	SAMEA110310650	Desulfovibrio piger
GCA_945491755.1	CALYUU000000000	SAMEA110310641	Escherichia coli
GCA_945486165.1	CALYSS000000000	SAMEA110310600	Lactobacillus johnsonii
GCA_945495305.1	CALYVX000000000	SAMEA110310621	Megasphaera elsdenii
GCA_945498915.1	CALYXC000000000	SAMEA110310672	Methanomethylophilus alvi
GCA_945489785.1	CALYUL000000000	SAMEA110310618	Phascolarctobacterium succinatutens
GCA_945498525.1	CALYXB000000000	SAMEA110310536	Ruminococcus flavefaciens
GCA_945487005.1	CALYTO000000000	SAMEA110310666	Succinatimonas hippei
GCA_945486825.1	CALYTK000000000	SAMEA110310620	Treponema succinifaciens
GCA_945494785.1	CALYVN000000000	SAMEA110310560	uncultured Alistipes sp.
GCA_945498275.1	CALYWW000000000	SAMEA110310656	uncultured Alphaproteobacteria bacterium
GCA_945501845.1	CALYYI000000000	SAMEA110310591	uncultured Alphaproteobacteria bacterium
GCA_945489485.1	CALYUF000000000	SAMEA110310710	uncultured Alphaproteobacteria bacterium
GCA_945499515.1	CALYXH000000000	SAMEA110310678	uncultured Bacillales bacterium
GCA_945495295.1	CALYVY000000000	SAMEA110310644	uncultured Bacteroidales bacterium
GCA_945501105.1	CALYXT000000000	SAMEA110310547	uncultured Bacteroidales bacterium
GCA_945486295.1	CALYSU000000000	SAMEA110310614	uncultured Bacteroidales bacterium
GCA_945487035.1	CALYTI000000000	SAMEA110310712	uncultured Bacteroidales bacterium
GCA_945501475.1	CALYYB000000000	SAMEA110310564	uncultured Bacteroidales bacterium
GCA_945494815.1	CALYVO000000000	SAMEA110310571	uncultured Bacteroidales bacterium
GCA_945489645.1	CALYUH000000000	SAMEA110310704	uncultured Bacteroidales bacterium
GCA_945501665.1	CALYYF000000000	SAMEA110310558	uncultured Bacteroidales bacterium
GCA_945491345.1	CALYUP000000000	SAMEA110310583	uncultured Bacteroidales bacterium
GCA_945497625.1	CALYWS000000000	SAMEA110310634	uncultured Bacteroidales bacterium
GCA_945496375.1	CALYWK000000000	SAMEA110310619	uncultured Bacteroidales bacterium
GCA_945497985.1	CALYWV000000000	SAMEA110310659	uncultured Bacteroidales bacterium
GCA_945497515.1	CALYWQ000000000	SAMEA110310660	uncultured Bacteroidales bacterium
GCA_945486235.1	CALYTC000000000	SAMEA110310566	uncultured Bacteroidales bacterium
GCA_945501165.1	CALYXU000000000	SAMEA110310543	uncultured Bacteroidales bacterium
GCA_945499045.1	CALYXD000000000	SAMEA110310681	uncultured Bacteroidales bacterium
GCA_945483715.1	CALYRY000000000	SAMEA110310590	uncultured Bacteroidales bacterium
GCA_945486115.1	CALYST000000000	SAMEA110310651	uncultured Bacteroidales bacterium
GCA_945485825.1	CALYSM000000000	SAMEA110310556	uncultured Bacteroidales bacterium
GCA_945486455.1	CALYTE000000000	SAMEA110310533	uncultured Bacteroidales bacterium
GCA_945489215.1	CALYUD000000000	SAMEA110310698	uncultured Bacteroidales bacterium
GCA_945500015.1	CALYXK000000000	SAMEA110310674	uncultured Bacteroidales bacterium
GCA_945488825.1	CALYTZ000000000	SAMEA110310582	uncultured Bacteroidales bacterium
GCA_945495215.1	CALYVT000000000	SAMEA110310531	uncultured Bacteroidales bacterium
GCA_945482605.1	CALYRI000000000	SAMEA110310682	uncultured Bacteroidales bacterium
GCA_945500915.1	CALYXR000000000	SAMEA110310702	uncultured Bacteroidales bacterium
GCA_945501795.1	CALYYH000000000	SAMEA110310611	uncultured Bacteroidales bacterium
GCA_945494625.1	CALYVM000000000	SAMEA110310577	uncultured Bacteroidales bacterium
GCA_945499205.1	CALYXG000000000	SAMEA110310669	uncultured Bacteroidales bacterium
GCA_945492795.1	CALYVD000000000	SAMEA110310648	uncultured Bacteroidales bacterium
GCA_945485805.1	CALYSN000000000	SAMEA110310565	uncultured Bacteroidales bacterium
GCA_945487305.1	CALYTR000000000	SAMEA110310657	uncultured Bacteroidales bacterium
GCA_945486725.1	CALYTJ000000000	SAMEA110310686	uncultured Bacteroidales bacterium
GCA_945489305.1	CALYUG000000000	SAMEA110310585	uncultured Bacteroidales bacterium
GCA_945486575.1	CALYTG000000000	SAMEA110310526	uncultured Bacteroidales bacterium
GCA_945501295.1	CALYXW000000000	SAMEA110310546	uncultured Bacteroidales bacterium
GCA_945498505.1	CALYWY000000000	SAMEA110310549	uncultured Bacteroidales bacterium
GCA_945501545.1	CALYXZ000000000	SAMEA110310552	uncultured Bacteroides sp.
GCA_945488955.1	CALYUA000000000	SAMEA110310568	uncultured Campylobacter sp.
GCA_945486105.1	CALYSY000000000	SAMEA110310587	uncultured Clostridia bacterium
GCA_945497945.1	CALYWU000000000	SAMEA110310664	uncultured Clostridia bacterium
GCA_945482895.1	CALYRK000000000	SAMEA110310581	uncultured Clostridia bacterium
GCA_945487015.1	CALYTM000000000	SAMEA110310705	uncultured Clostridia bacterium
GCA_945486805.1	CALYTH000000000	SAMEA110310662	uncultured Clostridia bacterium
GCA_945486085.1	CALYSO000000000	SAMEA110310572	uncultured Clostridia bacterium
GCA_945500235.1	CALYXM000000000	SAMEA110310696	uncultured Clostridia bacterium
GCA_945495365.1	CALYVU000000000	SAMEA110310544	uncultured Clostridia bacterium
GCA_945483635.1	CALYRW000000000	SAMEA110310635	uncultured Clostridia bacterium
GCA_945486035.1	CALYTB000000000	SAMEA110310579	uncultured Clostridia bacterium
GCA_945495815.1	CALYWB000000000	SAMEA110310692	uncultured Clostridia bacterium
GCA_945486155.1	CALYSV000000000	SAMEA110310569	uncultured Clostridia bacterium
GCA_945485675.1	CALYSL000000000	SAMEA110310553	uncultured Clostridia bacterium
GCA_945496115.1	CALYWF000000000	SAMEA110310646	uncultured Clostridia bacterium
GCA_945500865.1	CALYXQ000000000	SAMEA110310542	uncultured Clostridia bacterium
GCA_945501375.1	CALYXY000000000	SAMEA110310537	uncultured Clostridia bacterium
GCA_945492565.1	CALYUX000000000	SAMEA110310599	uncultured Clostridia bacterium
GCA_945499555.1	CALYXJ000000000	SAMEA110310668	uncultured Clostridia bacterium
GCA_945501755.1	CALYYJ000000000	SAMEA110310593	uncultured Clostridia bacterium
GCA_945483385.1	CALYRU000000000	SAMEA110310676	uncultured Clostridia bacterium
GCA_945495025.1	CALYVP000000000	SAMEA110310573	uncultured Clostridia bacterium
GCA_945486645.1	CALYTF000000000	SAMEA110310529	uncultured Clostridia bacterium
GCA_945485605.1	CALYSG000000000	SAMEA110310532	uncultured Clostridia bacterium
GCA_945486915.1	CALYTP000000000	SAMEA110310608	uncultured Clostridia bacterium
GCA_945487445.1	CALYTU000000000	SAMEA110310675	uncultured Clostridia bacterium
GCA_945492545.1	CALYVB000000000	SAMEA110310584	uncultured Clostridia bacterium
GCA_945496295.1	CALYWI000000000	SAMEA110310603	uncultured Clostridia bacterium
GCA_945489725.1	CALYUK000000000	SAMEA110310695	uncultured Clostridia bacterium
GCA_945486125.1	CALYSQ000000000	SAMEA110310654	uncultured Clostridia bacterium
GCA_945483655.1	CALYRX000000000	SAMEA110310628	uncultured Clostridia bacterium
GCA_945499505.1	CALYXI000000000	SAMEA110310680	uncultured Clostridia bacterium
GCA_945501255.1	CALYXV000000000	SAMEA110310700	uncultured Clostridia bacterium
GCA_945482995.1	CALYRM000000000	SAMEA110310683	uncultured Clostridia bacterium
GCA_945487765.1	CALYTV000000000	SAMEA110310679	uncultured Clostridia bacterium
GCA_945489905.1	CALYUN000000000	SAMEA110310708	uncultured Clostridia bacterium
GCA_945494075.1	CALYVI000000000	SAMEA110310714	uncultured Clostridia bacterium
GCA_945491475.1	CALYUQ000000000	SAMEA110310637	uncultured Clostridia bacterium
GCA_945496365.1	CALYWJ000000000	SAMEA110310610	uncultured Clostridia bacterium
GCA_945489195.1	CALYUC000000000	SAMEA110310703	uncultured Clostridia bacterium
GCA_945482615.1	CALYRG000000000	SAMEA110310586	uncultured Clostridia bacterium
GCA_945485485.1	CALYSD000000000	SAMEA110310562	uncultured Clostridia bacterium
GCA_945486175.1	CALYTA000000000	SAMEA110310595	uncultured Clostridia bacterium
GCA_945482655.1	CALYRH000000000	SAMEA110310589	uncultured Clostridia bacterium
GCA_945494525.1	CALYVL000000000	SAMEA110310548	uncultured Clostridia bacterium
GCA_945485965.1	CALYSP000000000	SAMEA110310575	uncultured Clostridium sp.
GCA_945494585.1	CALYVK000000000	SAMEA110310576	uncultured Clostridium sp.
GCA_945501875.1	CALYYP000000000	SAMEA110310598	uncultured Coprococcus sp.
GCA_945485955.1	CALYSR000000000	SAMEA110310632	uncultured Dialister sp.
GCA_945483375.1	CALYRQ000000000	SAMEA110310691	uncultured Elusimicrobia bacterium
GCA_945489235.1	CALYUE000000000	SAMEA110310640	uncultured Erysipelotrichaceae bacterium
GCA_945496705.1	CALYWM000000000	SAMEA110310713	uncultured Eubacterium sp.
GCA_945500645.1	CALYXO000000000	SAMEA110310715	uncultured Eubacterium sp.
GCA_945486135.1	CALYSW000000000	SAMEA110310653	uncultured Faecalibacterium sp.
GCA_945487085.1	CALYTL000000000	SAMEA110310673	uncultured Fibrobacter sp.
GCA_945492415.1	CALYUW000000000	SAMEA110310643	uncultured Fibrobacter sp.
GCA_945501765.1	CALYYN000000000	SAMEA110310527	uncultured Firmicutes bacterium
GCA_945491485.1	CALYUR000000000	SAMEA110310616	uncultured Lachnospiraceae bacterium
GCA_945485625.1	CALYSH000000000	SAMEA110310550	uncultured Lachnospiraceae bacterium
GCA_945484145.1	CALYSC000000000	SAMEA110310645	uncultured Lachnospiraceae bacterium
GCA_945501575.1	CALYYD000000000	SAMEA110310580	uncultured Lachnospiraceae bacterium
GCA_945492935.1	CALYVE000000000	SAMEA110310570	uncultured Lachnospiraceae bacterium
GCA_945500985.1	CALYXS000000000	SAMEA110310685	uncultured Lachnospiraceae bacterium
GCA_945501745.1	CALYYL000000000	SAMEA110310540	uncultured Lachnospiraceae bacterium
GCA_945501865.1	CALYYO000000000	SAMEA110310617	uncultured Lactobacillus sp.
GCA_945482925.1	CALYRJ000000000	SAMEA110310688	uncultured Lentisphaeraceae bacterium
GCA_945485585.1	CALYSF000000000	SAMEA110310534	uncultured Lentisphaeraceae bacterium
GCA_945495185.1	CALYVR000000000	SAMEA110310541	uncultured Lentisphaeraceae bacterium
GCA_945492685.1	CALYUZ000000000	SAMEA110310545	uncultured Methanomassiliicoccaceae archaeon
GCA_945492675.1	CALYVA000000000	SAMEA110310604	uncultured Methanomassiliicoccaceae archaeon
GCA_945491225.1	CALYUO000000000	SAMEA110310630	uncultured Mitsuokella sp.
GCA_945493695.1	CALYVH000000000	SAMEA110310623	uncultured Mollicutes bacterium
GCA_945501555.1	CALYYC000000000	SAMEA110310557	uncultured Mollicutes bacterium
GCA_945491605.1	CALYUS000000000	SAMEA110310612	uncultured Mollicutes bacterium
GCA_945483765.1	CALYSB000000000	SAMEA110310629	uncultured Myxococcales bacterium
GCA_945497695.1	CALYWT000000000	SAMEA110310638	uncultured Olsenella sp.
GCA_945487245.1	CALYTS000000000	SAMEA110310615	uncultured Prevotella sp.
GCA_945496025.1	CALYWE000000000	SAMEA110310627	uncultured Prevotella sp.
GCA_945492395.1	CALYUV000000000	SAMEA110310602	uncultured Prevotella sp.
GCA_945496105.1	CALYWH000000000	SAMEA110310633	uncultured Prevotella sp.
GCA_945495205.1	CALYVS000000000	SAMEA110310649	uncultured Prevotella sp.
GCA_945501735.1	CALYYK000000000	SAMEA110310613	uncultured Prevotella sp.
GCA_945493305.1	CALYVG000000000	SAMEA110310639	uncultured Prevotella sp.
GCA_945496095.1	CALYWG000000000	SAMEA110310626	uncultured Prevotella sp.
GCA_945493255.1	CALYVF000000000	SAMEA110310636	uncultured Prevotella sp.
GCA_945489105.1	CALYUB000000000	SAMEA110310588	uncultured Prevotella sp.
GCA_945500825.1	CALYXP000000000	SAMEA110310707	uncultured Prevotella sp.
GCA_945501405.1	CALYYA000000000	SAMEA110310699	uncultured Prevotella sp.
GCA_945501725.1	CALYYG000000000	SAMEA110310596	uncultured Prevotellaceae bacterium
GCA_945486445.1	CALYTD000000000	SAMEA110310606	uncultured Prevotellaceae bacterium
GCA_945500055.1	CALYXL000000000	SAMEA110310701	uncultured Prevotellaceae bacterium
GCA_945483905.1	CALYRZ000000000	SAMEA110310624	uncultured Prevotellaceae bacterium
GCA_945497555.1	CALYWR000000000	SAMEA110310655	uncultured Prevotellaceae bacterium
GCA_945497475.1	CALYWP000000000	SAMEA110310647	uncultured Prevotellaceae bacterium
GCA_945487095.1	CALYTQ000000000	SAMEA110310677	uncultured Prevotellaceae bacterium
GCA_945499095.1	CALYXE000000000	SAMEA110310661	uncultured Prevotellaceae bacterium
GCA_945500685.1	CALYXN000000000	SAMEA110310538	uncultured Rickettsiales bacterium
GCA_945485615.1	CALYSJ000000000	SAMEA110310555	uncultured Ruminococcus sp.
GCA_945501245.1	CALYXX000000000	SAMEA110310716	uncultured Ruminococcus sp.
GCA_945485525.1	CALYSE000000000	SAMEA110310530	uncultured Ruminococcus sp.
GCA_945492635.1	CALYUY000000000	SAMEA110310561	uncultured Selenomonadales bacterium
GCA_945494195.1	CALYVJ000000000	SAMEA110310711	uncultured Selenomonas sp.
GCA_945489595.1	CALYUI000000000	SAMEA110310642	uncultured Solobacterium sp.
GCA_945482975.1	CALYRO000000000	SAMEA110310670	uncultured Spirochaetales bacterium
GCA_945482955.1	CALYRN000000000	SAMEA110310684	uncultured Spirochaetales bacterium
GCA_945497425.1	CALYWO000000000	SAMEA110310658	uncultured Spirochaetales bacterium
GCA_945498605.1	CALYXA000000000	SAMEA110310567	uncultured Streptococcus sp.
GCA_945496665.1	CALYWL000000000	SAMEA110310709	uncultured Succinatimonas sp.
GCA_945488815.1	CALYTY000000000	SAMEA110310597	uncultured Treponema sp.
GCA_945495585.1	CALYVZ000000000	SAMEA110310665	uncultured Treponema sp.
GCA_945495855.1	CALYWC000000000	SAMEA110310697	uncultured Treponema sp.
GCA_945501835.1	CALYYM000000000	SAMEA110310535	uncultured Treponema sp.
GCA_945483175.1	CALYRT000000000	SAMEA110310563	uncultured Treponema sp.
GCA_945496675.1	CALYWN000000000	SAMEA110310706	uncultured Treponema sp.
GCA_945489335.1	CALYUJ000000000	SAMEA110310605	uncultured Treponema sp.
GCA_945491905.1	CALYUT000000000	SAMEA110310601	uncultured Treponema sp.
GCA_945495735.1	CALYWA000000000	SAMEA110310690	uncultured Treponema sp.
GCA_945501635.1	CALYYE000000000	SAMEA110310578	uncultured Treponema sp.
GCA_945485685.1	CALYSK000000000	SAMEA110310559	uncultured Treponema sp.
GCA_945484005.1	CALYSA000000000	SAMEA110310622	uncultured Veillonellaceae bacterium
GCA_945495865.1	CALYWD000000000	SAMEA110310693	uncultured Veillonellaceae bacterium
GCA_945487985.1	CALYTX000000000	SAMEA110310689	uncultured Verrucomicrobiota bacterium
GCA_945483525.1	CALYRV000000000	SAMEA110310574	uncultured Verrucomicrobiota bacterium
GCA_945498495.1	CALYWZ000000000	SAMEA110310539	uncultured Verrucomicrobiota bacterium
GCA_945499135.1	CALYXF000000000	SAMEA110310717	uncultured bacterium
GCA_945495035.1	CALYVQ000000000	SAMEA110310652	uncultured bacterium
GCA_945483205.1	CALYRR000000000	SAMEA110310694	uncultured bacterium
GCA_945486205.1	CALYSZ000000000	SAMEA110310594	uncultured bacterium
GCA_945495375.1	CALYVV000000000	SAMEA110310625	uncultured bacterium
GCA_945486215.1	CALYSX000000000	SAMEA110310592	uncultured bacterium
GCA_945487325.1	CALYTT000000000	SAMEA110310671	uncultured bacterium
GCA_945485795.1	CALYSI000000000	SAMEA110310528	uncultured bacterium
GCA_945486875.1	CALYTN000000000	SAMEA110310609	uncultured bacterium
GCA_945489445.1	CALYUM000000000	SAMEA110310607	uncultured bacterium
GCA_945482725.1	CALYRL000000000	SAMEA110310667	uncultured bacterium
GCA_945487905.1	CALYTW000000000	SAMEA110310687	uncultured cyanobacterium
GCA_945483475.1	CALYRS000000000	SAMEA110310551	uncultured cyanobacterium
GCA_945483255.1	CALYRP000000000	SAMEA110310554	uncultured proteobacterium

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EMG produced TPA metagenomics assembly of PRJNA471937 data set (Pig gut metagenome Metagenomic assembly).

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