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Accession: PRJEB52643 ID: 840725

EMG produced TPA metagenomics assembly of PRJNA373834 data set (Metagenomic analysis of gut microbiota in sows and piglets).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA373834, and was assembled with metaSPAdes v3. More...
AccessionPRJEB52643
Data TypeGenome sequencing and assembly
ScopeMonoisolate
KeywordTPA:assembly
PublicationsMitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
SubmissionRegistration date: 20-May-2022
EMG
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)9417
WGS master324
Publications
PubMed1
PMC1
Other datasets
BioSample324
Assembly322
Assembly details:
Assembly levelNumber of Assemblies
322
322
AssemblyLevelWGSBioSampleTaxonomy
GCA_945829475.1ContigCALZUP000000000SAMEA110360198
GCA_945827685.1ContigCALZNZ000000000SAMEA110360197
GCA_945830275.1ContigCALZXX000000000SAMEA110360253
GCA_945828695.1ContigCALZRV000000000SAMEA110360241
GCA_945830005.1ContigCALZWZ000000000SAMEA110360356
GCA_945830815.1ContigCAMAAB000000000SAMEA110360220
GCA_945827485.1ContigCALZNQ000000000SAMEA110360291
GCA_945829905.1ContigCALZWP000000000SAMEA110360279
GCA_945830905.1ContigCAMAAJ000000000SAMEA110360208
GCA_945829635.1ContigCALZVP000000000SAMEA110360273
GCA_945829565.1ContigCALZVK000000000SAMEA110360250
GCA_945828655.1ContigCALZRT000000000SAMEA110360159
GCA_945829875.1ContigCALZWH000000000SAMEA110360283
GCA_945830665.1ContigCALZZP000000000SAMEA110360392
GCA_945828285.1ContigCALZQW000000000SAMEA110360214
GCA_945830235.1ContigCALZYG000000000SAMEA110360265
GCA_945828365.1ContigCALZQP000000000SAMEA110360288
GCA_945828675.1ContigCALZSF000000000SAMEA110360207
GCA_945828775.1ContigCALZSK000000000SAMEA110360284
GCA_945831235.1ContigCAMABZ000000000SAMEA110360215
GCA_945827615.1ContigCALZNP000000000SAMEA110360243
GCA_945831115.1ContigCAMAAU000000000SAMEA110360423
GCA_945827645.1ContigCALZNX000000000SAMEA110360224
GCA_945829845.1ContigCALZWO000000000SAMEA110360196
GCA_945828425.1ContigCALZQX000000000SAMEA110360268
GCA_945828185.1ContigCALZOV000000000SAMEA110360317
GCA_945829005.1ContigCALZSX000000000SAMEA110360258
GCA_945831355.1ContigCAMACE000000000SAMEA110360227
GCA_945828715.1ContigCALZSB000000000SAMEA110360336
GCA_945828745.1ContigCALZRY000000000SAMEA110360248
GCA_945828665.1ContigCALZRW000000000SAMEA110360165
GCA_945830685.1ContigCALZZM000000000SAMEA110360391
GCA_945830615.1ContigCALZZI000000000SAMEA110360402
GCA_945828855.1ContigCALZSR000000000SAMEA110360412
GCA_945830825.1ContigCAMAAH000000000SAMEA110360240
GCA_945828235.1ContigCALZQE000000000SAMEA110360202
GCA_945830265.1ContigCALZYF000000000SAMEA110360261
GCA_945830455.1ContigCALZYD000000000SAMEA110360325
GCA_945827815.1ContigCALZNS000000000SAMEA110360426
GCA_945830555.1ContigCALZZB000000000SAMEA110360337
GCA_945831785.1ContigCAMAEB000000000SAMEA110360229
GCA_945831155.1ContigCAMABL000000000SAMEA110360251
GCA_945828395.1ContigCALZQM000000000SAMEA110360204
GCA_945830805.1ContigCAMAAE000000000SAMEA110360239
GCA_945831505.1ContigCAMACR000000000SAMEA110360152
GCA_945830045.1ContigCALZXB000000000SAMEA110360190
GCA_945828785.1ContigCALZSE000000000SAMEA110360201
GCA_945830785.1ContigCAMAAA000000000SAMEA110360245
GCA_945830895.1ContigCAMAAL000000000SAMEA110360233
GCA_945828825.1ContigCALZSG000000000SAMEA110360290
GCA_945831315.1ContigCAMABR000000000SAMEA110360260
GCA_945827985.1ContigCALZOL000000000SAMEA110360246
GCA_945827875.1ContigCALZOF000000000SAMEA110360257
GCA_945828195.1ContigCALZQB000000000SAMEA110360449
GCA_945830205.1ContigCALZXT000000000SAMEA110360294
GCA_945828135.1ContigCALZOD000000000SAMEA110360157
GCA_945829595.1ContigCALZVH000000000SAMEA110360221
GCA_945828735.1ContigCALZSD000000000SAMEA110360173
GCA_945827665.1ContigCALZON000000000SAMEA110360353
GCA_945828965.1ContigCALZTF000000000SAMEA110360394
GCA_945828865.1ContigCALZSO000000000SAMEA110360175
GCA_945828175.1ContigCALZQD000000000SAMEA110360375
GCA_945828055.1ContigCALZPK000000000SAMEA110360315
GCA_945828875.1ContigCALZSU000000000SAMEA110360280
GCA_945827495.1ContigCALZNI000000000SAMEA110360303
GCA_945828535.1ContigCALZRJ000000000SAMEA110360387
GCA_945828985.1ContigCALZTC000000000SAMEA110360349
GCA_945828885.1ContigCALZSP000000000SAMEA110360180
GCA_945829315.1ContigCALZUH000000000SAMEA110360168
GCA_945829355.1ContigCALZUL000000000SAMEA110360444
GCA_945828165.1ContigCALZPV000000000SAMEA110360172
GCA_945828555.1ContigCALZRK000000000SAMEA110360396
GCA_945827785.1ContigCALZOR000000000SAMEA110360382
GCA_945829075.1ContigCALZTE000000000SAMEA110360147
GCA_945827945.1ContigCALZPJ000000000SAMEA110360411
GCA_945829065.1ContigCALZTJ000000000SAMEA110360342
GCA_945828795.1ContigCALZSI000000000SAMEA110360132
GCA_945827515.1ContigCALZNO000000000SAMEA110360420
GCA_945830025.1ContigCALZXG000000000SAMEA110360340
GCA_945830405.1ContigCALZYH000000000SAMEA110360267
GCA_945830295.1ContigCALZYI000000000SAMEA110360133
GCA_945831185.1ContigCAMABO000000000SAMEA110360177
GCA_945829745.1ContigCALZVS000000000SAMEA110360305
GCA_945831245.1ContigCAMACC000000000SAMEA110360143
GCA_945829985.1ContigCALZWY000000000SAMEA110360360
GCA_945829785.1ContigCALZWD000000000SAMEA110360210
GCA_945830315.1ContigCALZYL000000000SAMEA110360236
GCA_945830985.1ContigCAMAAT000000000SAMEA110360140
GCA_945827865.1ContigCALZNV000000000SAMEA110360386
GCA_945829975.1ContigCALZWV000000000SAMEA110360369
GCA_945831525.1ContigCAMACV000000000SAMEA110360162
GCA_945831295.1ContigCAMABT000000000SAMEA110360249
GCA_945830135.1ContigCALZXW000000000SAMEA110360130
GCA_945829725.1ContigCALZVT000000000SAMEA110360320
GCA_945831015.1ContigCAMABH000000000SAMEA110360134
GCA_945830635.1ContigCALZZL000000000SAMEA110360401
GCA_945829535.1ContigCALZVD000000000SAMEA110360137
GCA_945831495.1ContigCAMACT000000000SAMEA110360129
GCA_945829515.1ContigCALZVC000000000SAMEA110360135
GCA_945829925.1ContigCALZWR000000000SAMEA110360304
GCA_945827895.1ContigCALZPC000000000SAMEA110360348
GCA_945829555.1ContigCALZVJ000000000SAMEA110360225
GCA_945829895.1ContigCALZWM000000000SAMEA110360230
GCA_945829805.1ContigCALZWF000000000SAMEA110360195
GCA_945831385.1ContigCAMACH000000000SAMEA110360341
GCA_945828205.1ContigCALZQK000000000SAMEA110360126
GCA_945831465.1ContigCAMACK000000000SAMEA110360339
GCA_945829415.1ContigCALZUR000000000SAMEA110360151
GCA_945829865.1ContigCALZWI000000000SAMEA110360189
GCA_945831605.1ContigCAMADG000000000SAMEA110360146
GCA_945831625.1ContigCAMADA000000000SAMEA110360191
GCA_945831145.1ContigCAMABB000000000SAMEA110360427
GCA_945829585.1ContigCALZVF000000000SAMEA110360254
GCA_945829935.1ContigCALZWU000000000SAMEA110360310
GCA_945830445.1ContigCALZYP000000000SAMEA110360322
GCA_945830185.1ContigCALZXL000000000SAMEA110360237
GCA_945829835.1ContigCALZWQ000000000SAMEA110360186
GCA_945829885.1ContigCALZWK000000000SAMEA110360163
GCA_945830955.1ContigCAMAAP000000000SAMEA110360314
GCA_945829665.1ContigCALZVX000000000SAMEA110360155
GCA_945830585.1ContigCALZZG000000000SAMEA110360335
GCA_945830625.1ContigCALZZJ000000000SAMEA110360406
GCA_945829735.1ContigCALZWA000000000SAMEA110360293
GCA_945829655.1ContigCALZVR000000000SAMEA110360263
GCA_945829995.1ContigCALZWX000000000SAMEA110360377
GCA_945830355.1ContigCALZYA000000000SAMEA110360285
GCA_945831335.1ContigCAMABM000000000SAMEA110360178
GCA_945829775.1ContigCALZWC000000000SAMEA110360150
GCA_945829755.1ContigCALZVW000000000SAMEA110360301
GCA_945831265.1ContigCAMABU000000000SAMEA110360169
GCA_945829465.1ContigCALZUT000000000SAMEA110360174
GCA_945830535.1ContigCALZYO000000000SAMEA110360350
GCA_945830735.1ContigCALZZV000000000SAMEA110360153
GCA_945830855.1ContigCAMAAC000000000SAMEA110360252
GCA_945829605.1ContigCALZVL000000000SAMEA110360277
GCA_945831515.1ContigCAMACU000000000SAMEA110360179
GCA_945830215.1ContigCALZXM000000000SAMEA110360302
GCA_945829815.1ContigCALZWN000000000SAMEA110360269
GCA_945829525.1ContigCALZVE000000000SAMEA110360235
GCA_945829915.1ContigCALZWJ000000000SAMEA110360212
GCA_945830115.1ContigCALZXK000000000SAMEA110360161
GCA_945830795.1ContigCALZZZ000000000SAMEA110360274
GCA_945831635.1ContigCAMACZ000000000SAMEA110360158
GCA_945830655.1ContigCALZZN000000000SAMEA110360399
GCA_945831845.1ContigCAMADW000000000SAMEA110360259
GCA_945830525.1ContigCALZYV000000000SAMEA110360379
GCA_945830545.1ContigCALZZD000000000SAMEA110360331
GCA_945829695.1ContigCALZVO000000000SAMEA110360156
GCA_945831925.1ContigCAMAEC000000000SAMEA110360448
GCA_945830395.1ContigCALZYE000000000SAMEA110360262
GCA_945829955.1ContigCALZWT000000000SAMEA110360344
GCA_945829715.1ContigCALZVZ000000000SAMEA110360271
GCA_945831395.1ContigCAMACJ000000000SAMEA110360334
GCA_945831435.1ContigCAMACL000000000SAMEA110360316
GCA_945830565.1ContigCALZZC000000000SAMEA110360376
GCA_945830595.1ContigCALZZH000000000SAMEA110360370
GCA_945830145.1ContigCALZXQ000000000SAMEA110360297
GCA_945830875.1ContigCAMAAD000000000SAMEA110360171
GCA_945831105.1ContigCAMABD000000000SAMEA110360361
GCA_945829645.1ContigCALZVN000000000SAMEA110360141
GCA_945830505.1ContigCALZYT000000000SAMEA110360385
GCA_945831215.1ContigCAMABS000000000SAMEA110360154
GCA_945827705.1ContigCALZNE000000000SAMEA110360308
GCA_945827745.1ContigCALZPM000000000SAMEA110360354
GCA_945827695.1ContigCALZOQ000000000SAMEA110360404
GCA_945828115.1ContigCALZPI000000000SAMEA110360433
GCA_945828325.1ContigCALZQN000000000SAMEA110360188
GCA_945827835.1ContigCALZOM000000000SAMEA110360352
GCA_945828035.1ContigCALZNT000000000SAMEA110360148
GCA_945827795.1ContigCALZOJ000000000SAMEA110360138
GCA_945828805.1ContigCALZSC000000000SAMEA110360149
GCA_945828275.1ContigCALZQG000000000SAMEA110360209
GCA_945827655.1ContigCALZOO000000000SAMEA110360238
GCA_945828045.1ContigCALZOE000000000SAMEA110360367
GCA_945828685.1ContigCALZSH000000000SAMEA110360184
GCA_945828515.1ContigCALZRG000000000SAMEA110360373
GCA_945827755.1ContigCALZPF000000000SAMEA110360398
GCA_945829345.1ContigCALZUK000000000SAMEA110360359
GCA_945828945.1ContigCALZTA000000000SAMEA110360295
GCA_945827885.1ContigCALZOW000000000SAMEA110360351
GCA_945828995.1ContigCALZSZ000000000SAMEA110360345
GCA_945828975.1ContigCALZSS000000000SAMEA110360206
GCA_945829365.1ContigCALZUM000000000SAMEA110360160
GCA_945827955.1ContigCALZOC000000000SAMEA110360364
GCA_945828095.1ContigCALZOZ000000000SAMEA110360372
GCA_945830765.1ContigCALZZO000000000SAMEA110360442
GCA_945831375.1ContigCAMACF000000000SAMEA110360330
GCA_945828575.1ContigCALZRP000000000SAMEA110360400
GCA_945829285.1ContigCALZUG000000000SAMEA110360418
GCA_945828725.1ContigCALZSA000000000SAMEA110360332
GCA_945830365.1ContigCALZYC000000000SAMEA110360213
GCA_945830335.1ContigCALZYQ000000000SAMEA110360222
GCA_945830015.1ContigCALZXA000000000SAMEA110360205
GCA_945829455.1ContigCALZUX000000000SAMEA110360439
GCA_945830935.1ContigCAMAAQ000000000SAMEA110360323
GCA_945830745.1ContigCALZZW000000000SAMEA110360422
GCA_945830915.1ContigCAMAAM000000000SAMEA110360292
GCA_945830195.1ContigCALZXN000000000SAMEA110360270
GCA_945828815.1ContigCALZSN000000000SAMEA110360192
GCA_945830375.1ContigCALZZA000000000SAMEA110360247
GCA_945830975.1ContigCAMAAS000000000SAMEA110360421
GCA_945829615.1ContigCALZVM000000000SAMEA110360312
GCA_945830175.1ContigCALZXS000000000SAMEA110360278
GCA_945829275.1ContigCALZUF000000000SAMEA110360381
GCA_945827545.1ContigCALZNJ000000000SAMEA110360282
GCA_945828025.1ContigCALZNU000000000SAMEA110360306
GCA_945827505.1ContigCALZNN000000000SAMEA110360424
GCA_945831535.1ContigCAMACW000000000SAMEA110360217
GCA_945828505.1ContigCALZQT000000000SAMEA110360170
GCA_945827995.1ContigCALZPD000000000SAMEA110360309
GCA_945829385.1ContigCALZUI000000000SAMEA110360343
GCA_945831205.1ContigCAMABP000000000SAMEA110360131
GCA_945829965.1ContigCALZWW000000000SAMEA110360328
GCA_945830485.1ContigCALZYJ000000000SAMEA110360358
GCA_945830715.1ContigCALZZY000000000SAMEA110360441
GCA_945829435.1ContigCALZUO000000000SAMEA110360446
GCA_945829295.1ContigCALZUE000000000SAMEA110360440
GCA_945827915.1ContigCALZQS000000000SAMEA110360226
GCA_945827455.1ContigCALZOT000000000SAMEA110360255
GCA_945827805.1ContigCALZOU000000000SAMEA110360346
GCA_945828565.1ContigCALZRM000000000SAMEA110360378
GCA_945828765.1ContigCALZRX000000000SAMEA110360194
GCA_945827595.1ContigCALZPN000000000SAMEA110360232
GCA_945829325.1ContigCALZUJ000000000SAMEA110360415
GCA_945829155.1ContigCALZTM000000000SAMEA110360436
GCA_945827765.1ContigCALZPS000000000SAMEA110360355
GCA_945828755.1ContigCALZRZ000000000SAMEA110360324
GCA_945830865.1ContigCAMAAI000000000SAMEA110360183
GCA_945829795.1ContigCALZWE000000000SAMEA110360166
GCA_945830105.1ContigCALZXJ000000000SAMEA110360193
GCA_945829705.1ContigCALZVY000000000SAMEA110360326
GCA_945832005.1ContigCAMAER000000000SAMEA110360425
GCA_945830725.1ContigCALZZT000000000SAMEA110360430
GCA_945830945.1ContigCAMAAO000000000SAMEA110360318
GCA_945830885.1ContigCAMAAK000000000SAMEA110360187
GCA_945831565.1ContigCAMADJ000000000SAMEA110360185
GCA_945831675.1ContigCAMADE000000000SAMEA110360218
GCA_945830165.1ContigCALZXR000000000SAMEA110360244
GCA_945831095.1ContigCAMAAV000000000SAMEA110360409
GCA_945829375.1ContigCALZUZ000000000SAMEA110360145
GCA_945829545.1ContigCALZVG000000000SAMEA110360223
GCA_945831425.1ContigCAMACI000000000SAMEA110360296
GCA_945830245.1ContigCALZXV000000000SAMEA110360234
GCA_945829685.1ContigCALZVQ000000000SAMEA110360264
GCA_945831275.1ContigCAMABV000000000SAMEA110360231
GCA_945830835.1ContigCAMAAG000000000SAMEA110360287
GCA_945828935.1ContigCALZTK000000000SAMEA110360333
GCA_945827715.1ContigCALZNW000000000SAMEA110360281
GCA_945831475.1ContigCAMACO000000000SAMEA110360272
GCA_945827555.1ContigCALZND000000000SAMEA110360389
GCA_945827925.1ContigCALZOA000000000SAMEA110360384
GCA_945832125.1ContigCAMAFK000000000SAMEA110360417
GCA_945828595.1ContigCALZRS000000000SAMEA110360405
GCA_945831445.1ContigCAMACP000000000SAMEA110360289
GCA_945830845.1ContigCAMAAF000000000SAMEA110360256
GCA_945828475.1ContigCALZRE000000000SAMEA110360182
GCA_945831175.1ContigCAMABN000000000SAMEA110360128
GCA_945828485.1ContigCALZQQ000000000SAMEA110360211
GCA_945828905.1ContigCALZTB000000000SAMEA110360266
GCA_945827725.1ContigCALZOB000000000SAMEA110360407
GCA_945828005.1ContigCALZQC000000000SAMEA110360127
GCA_945831055.1ContigCAMAAW000000000SAMEA110360338
GCA_945830385.1ContigCALZYY000000000SAMEA110360276
GCA_945830705.1ContigCALZZS000000000SAMEA110360428
GCA_945830495.1ContigCALZYR000000000SAMEA110360374
GCA_945831135.1ContigCAMABC000000000SAMEA110360397
GCA_945829765.1ContigCALZVU000000000SAMEA110360298
GCA_945829015.1ContigCALZSY000000000SAMEA110360300
GCA_945827535.1ContigCALZOI000000000SAMEA110360395
GCA_945827565.1ContigCALZNR000000000SAMEA110360139
GCA_945828645.1ContigCALZRU000000000SAMEA110360136
GCA_945827475.1ContigCALZNM000000000SAMEA110360414
GCA_945829035.1ContigCALZTD000000000SAMEA110360432
GCA_945827585.1ContigCALZQF000000000SAMEA110360363
GCA_945828445.1ContigCALZQJ000000000SAMEA110360321
GCA_945828705.1ContigCALZSL000000000SAMEA110360299
GCA_945827775.1ContigCALZPG000000000SAMEA110360419
GCA_945828895.1ContigCALZSQ000000000SAMEA110360142
GCA_945828155.1ContigCALZPZ000000000SAMEA110360167
GCA_945827465.1ContigCALZOH000000000SAMEA110360380
GCA_945831405.1ContigCAMACM000000000SAMEA110360347
GCA_945831875.1ContigCAMAEK000000000SAMEA110360437
GCA_945831365.1ContigCAMACG000000000SAMEA110360311
GCA_945830695.1ContigCALZZU000000000SAMEA110360435
GCA_945828835.1ContigCALZSJ000000000SAMEA110360219
GCA_945830095.1ContigCALZXF000000000SAMEA110360181
GCA_945831025.1ContigCAMABE000000000SAMEA110360416
GCA_945827425.1ContigCALZNA000000000SAMEA110360410
GCA_945831555.1ContigCAMADB000000000SAMEA110360176
GCA_945829625.1ContigCALZVV000000000SAMEA110360319
GCA_945831075.1ContigCAMABA000000000SAMEA110360365
GCA_945829825.1ContigCALZWL000000000SAMEA110360203
GCA_945829675.1ContigCALZWB000000000SAMEA110360313
GCA_945831065.1ContigCAMAAX000000000SAMEA110360388
GCA_945831645.1ContigCAMADH000000000SAMEA110360199
GCA_945828465.1ContigCALZQO000000000SAMEA110360216
GCA_945828255.1ContigCALZPY000000000SAMEA110360447
GCA_945830605.1ContigCALZZF000000000SAMEA110360368
GCA_945830925.1ContigCAMAAN000000000SAMEA110360307
GCA_945830645.1ContigCALZZK000000000SAMEA110360403
GCA_945827735.1ContigCALZPH000000000SAMEA110360393
GCA_945830515.1ContigCALZYN000000000SAMEA110360383
GCA_945830575.1ContigCALZZE000000000SAMEA110360371
GCA_945829335.1ContigCALZUU000000000SAMEA110360429
GCA_945829855.1ContigCALZWG000000000SAMEA110360242
GCA_945829575.1ContigCALZVI000000000SAMEA110360200
GCA_945830285.1ContigCALZXZ000000000SAMEA110360286
GCA_945830475.1ContigCALZYW000000000SAMEA110360329
GCA_945830065.1ContigCALZXE000000000SAMEA110360144
GCA_945828225.1ContigCALZQI000000000SAMEA110360434
GCA_945827855.1ContigCALZNH000000000SAMEA110360275
GCA_945831745.1ContigCAMADR000000000SAMEA110360443
GCA_945828145.1ContigCALZQL000000000SAMEA110360327
GCA_945829055.1ContigCALZTH000000000SAMEA110360366
GCA_945828315.1ContigCALZQA000000000SAMEA110360445
GCA_945827675.1ContigCALZNK000000000SAMEA110360362
GCA_945829045.1ContigCALZTG000000000SAMEA110360357
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