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Accession: PRJEB53634 ID: 850767

EMG produced TPA metagenomics assembly of PRJNA575543 data set (Metagenomic characterization of intestinal regions in pigs with contrasting feed efficiency).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA575543, and was assembled with metaSPAdes v3. More...
AccessionPRJEB53634
Data TypeGenome sequencing and assembly
ScopeMonoisolate
KeywordTPA:assembly
PublicationsMitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
SubmissionRegistration date: 19-Jun-2022
EMG
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)4132
WGS master267
Publications
PubMed1
PMC1
Other datasets
BioSample267
Assembly267
Assembly details:
Assembly levelNumber of Assemblies
267
267
AssemblyLevelWGSBioSampleTaxonomy
GCA_946055675.1ContigCAMGHA000000000SAMEA110446457
GCA_946055385.1ContigCAMGFW000000000SAMEA110446496
GCA_946055795.1ContigCAMGHF000000000SAMEA110446497
GCA_946054915.1ContigCAMGDS000000000SAMEA110446494
GCA_946061235.1ContigCAMGQI000000000SAMEA110446420
GCA_946058055.1ContigCAMGMI000000000SAMEA110446592
GCA_946055525.1ContigCAMGGJ000000000SAMEA110446459
GCA_946055635.1ContigCAMGGO000000000SAMEA110446440
GCA_946061435.1ContigCAMGRZ000000000SAMEA110446596
GCA_946056225.1ContigCAMGIW000000000SAMEA110446684
GCA_946054945.1ContigCAMGEC000000000SAMEA110446476
GCA_946061245.1ContigCAMGPL000000000SAMEA110446579
GCA_946055815.1ContigCAMGHH000000000SAMEA110446499
GCA_946056745.1ContigCAMGKM000000000SAMEA110446505
GCA_946055415.1ContigCAMGFS000000000SAMEA110446478
GCA_946062455.1ContigCAMGVT000000000SAMEA110446631
GCA_946061875.1ContigCAMGTI000000000SAMEA110446576
GCA_946062165.1ContigCAMGTX000000000SAMEA110446667
GCA_946062115.1ContigCAMGTW000000000SAMEA110446681
GCA_946055305.1ContigCAMGFE000000000SAMEA110446436
GCA_946055605.1ContigCAMGFP000000000SAMEA110446442
GCA_946055735.1ContigCAMGHD000000000SAMEA110446451
GCA_946055465.1ContigCAMGGH000000000SAMEA110446470
GCA_946055195.1ContigCAMGEV000000000SAMEA110446453
GCA_946055255.1ContigCAMGEZ000000000SAMEA110446466
GCA_946054995.1ContigCAMGDZ000000000SAMEA110446446
GCA_946055005.1ContigCAMGEF000000000SAMEA110446467
GCA_946055725.1ContigCAMGGV000000000SAMEA110446463
GCA_946054905.1ContigCAMGDU000000000SAMEA110446485
GCA_946062405.1ContigCAMGVU000000000SAMEA110446589
GCA_946061605.1ContigCAMGSR000000000SAMEA110446540
GCA_946062185.1ContigCAMGUB000000000SAMEA110446582
GCA_946062235.1ContigCAMGUJ000000000SAMEA110446686
GCA_946061695.1ContigCAMGRO000000000SAMEA110446563
GCA_946060335.1ContigCAMGNO000000000SAMEA110446679
GCA_946061045.1ContigCAMGQL000000000SAMEA110446658
GCA_946056875.1ContigCAMGLJ000000000SAMEA110446593
GCA_946062415.1ContigCAMGUZ000000000SAMEA110446655
GCA_946060555.1ContigCAMGOG000000000SAMEA110446584
GCA_946060315.1ContigCAMGNK000000000SAMEA110446645
GCA_946062035.1ContigCAMGTS000000000SAMEA110446647
GCA_946060885.1ContigCAMGOU000000000SAMEA110446541
GCA_946060275.1ContigCAMGNN000000000SAMEA110446671
GCA_946059965.1ContigCAMGNG000000000SAMEA110446668
GCA_946062685.1ContigCAMGWM000000000SAMEA110446526
GCA_946061575.1ContigCAMGRK000000000SAMEA110446569
GCA_946058395.1ContigCAMGMN000000000SAMEA110446580
GCA_946056255.1ContigCAMGIX000000000SAMEA110446628
GCA_946055165.1ContigCAMGFA000000000SAMEA110446437
GCA_946054895.1ContigCAMGDR000000000SAMEA110446480
GCA_946055035.1ContigCAMGEI000000000SAMEA110446484
GCA_946055235.1ContigCAMGEW000000000SAMEA110446456
GCA_946055755.1ContigCAMGGW000000000SAMEA110446477
GCA_946056385.1ContigCAMGJE000000000SAMEA110446544
GCA_946055045.1ContigCAMGEH000000000SAMEA110446487
GCA_946055665.1ContigCAMGGX000000000SAMEA110446472
GCA_946054885.1ContigCAMGDV000000000SAMEA110446464
GCA_946055015.1ContigCAMGED000000000SAMEA110446481
GCA_946059305.1ContigCAMGMU000000000SAMEA110446425
GCA_946057985.1ContigCAMGMG000000000SAMEA110446672
GCA_946062655.1ContigCAMGWD000000000SAMEA110446512
GCA_946055805.1ContigCAMGHG000000000SAMEA110446449
GCA_946055775.1ContigCAMGHE000000000SAMEA110446452
GCA_946056095.1ContigCAMGIJ000000000SAMEA110446570
GCA_946055695.1ContigCAMGGR000000000SAMEA110446447
GCA_946055515.1ContigCAMGGA000000000SAMEA110446489
GCA_946060685.1ContigCAMGOT000000000SAMEA110446670
GCA_946060795.1ContigCAMGON000000000SAMEA110446532
GCA_946062065.1ContigCAMGTR000000000SAMEA110446587
GCA_946060765.1ContigCAMGPE000000000SAMEA110446546
GCA_946055705.1ContigCAMGGU000000000SAMEA110446432
GCA_946061145.1ContigCAMGQB000000000SAMEA110446600
GCA_946055115.1ContigCAMGEQ000000000SAMEA110446474
GCA_946055065.1ContigCAMGEL000000000SAMEA110446483
GCA_946055575.1ContigCAMGGL000000000SAMEA110446475
GCA_946061675.1ContigCAMGRQ000000000SAMEA110446524
GCA_946056715.1ContigCAMGLA000000000SAMEA110446506
GCA_946061515.1ContigCAMGRL000000000SAMEA110446510
GCA_946061995.1ContigCAMGUE000000000SAMEA110446620
GCA_946058435.1ContigCAMGMR000000000SAMEA110446622
GCA_946061345.1ContigCAMGRA000000000SAMEA110446557
GCA_946060975.1ContigCAMGQH000000000SAMEA110446519
GCA_946056995.1ContigCAMGMA000000000SAMEA110446575
GCA_946058245.1ContigCAMGML000000000SAMEA110446542
GCA_946062215.1ContigCAMGUG000000000SAMEA110446639
GCA_946056455.1ContigCAMGJS000000000SAMEA110446614
GCA_946060595.1ContigCAMGOI000000000SAMEA110446525
GCA_946062365.1ContigCAMGUW000000000SAMEA110446610
GCA_946059755.1ContigCAMGNF000000000SAMEA110446624
GCA_946062145.1ContigCAMGUD000000000SAMEA110446426
GCA_946061725.1ContigCAMGSU000000000SAMEA110446646
GCA_946056785.1ContigCAMGKS000000000SAMEA110446637
GCA_946056665.1ContigCAMGKR000000000SAMEA110446664
GCA_946060925.1ContigCAMGPG000000000SAMEA110446515
GCA_946061715.1ContigCAMGRU000000000SAMEA110446535
GCA_946056925.1ContigCAMGLD000000000SAMEA110446530
GCA_946061335.1ContigCAMGRD000000000SAMEA110446559
GCA_946060835.1ContigCAMGPC000000000SAMEA110446651
GCA_946060985.1ContigCAMGPP000000000SAMEA110446538
GCA_946058235.1ContigCAMGMJ000000000SAMEA110446597
GCA_946056915.1ContigCAMGLG000000000SAMEA110446550
GCA_946055765.1ContigCAMGHC000000000SAMEA110446634
GCA_946056265.1ContigCAMGJA000000000SAMEA110446517
GCA_946056365.1ContigCAMGJD000000000SAMEA110446553
GCA_946055105.1ContigCAMGEK000000000SAMEA110446435
GCA_946055185.1ContigCAMGER000000000SAMEA110446503
GCA_946056165.1ContigCAMGIQ000000000SAMEA110446602
GCA_946061745.1ContigCAMGSA000000000SAMEA110446539
GCA_946061865.1ContigCAMGSY000000000SAMEA110446633
GCA_946056855.1ContigCAMGLI000000000SAMEA110446619
GCA_946059285.1ContigCAMGMW000000000SAMEA110446537
GCA_946056585.1ContigCAMGKD000000000SAMEA110446629
GCA_946061685.1ContigCAMGRP000000000SAMEA110446522
GCA_946060825.1ContigCAMGPO000000000SAMEA110446653
GCA_946059775.1ContigCAMGND000000000SAMEA110446612
GCA_946061315.1ContigCAMGRB000000000SAMEA110446617
GCA_946061655.1ContigCAMGRM000000000SAMEA110446604
GCA_946061895.1ContigCAMGUC000000000SAMEA110446571
GCA_946060775.1ContigCAMGOL000000000SAMEA110446549
GCA_946056945.1ContigCAMGLF000000000SAMEA110446536
GCA_946061445.1ContigCAMGRY000000000SAMEA110446635
GCA_946057045.1ContigCAMGLQ000000000SAMEA110446509
GCA_946060715.1ContigCAMGOS000000000SAMEA110446642
GCA_946062435.1ContigCAMGVA000000000SAMEA110446601
GCA_946062175.1ContigCAMGUO000000000SAMEA110446638
GCA_946061825.1ContigCAMGTD000000000SAMEA110446666
GCA_946056495.1ContigCAMGJY000000000SAMEA110446548
GCA_946060615.1ContigCAMGOR000000000SAMEA110446507
GCA_946057005.1ContigCAMGLV000000000SAMEA110446663
GCA_946056125.1ContigCAMGIM000000000SAMEA110446543
GCA_946055915.1ContigCAMGHQ000000000SAMEA110446643
GCA_946055835.1ContigCAMGHK000000000SAMEA110446523
GCA_946055225.1ContigCAMGES000000000SAMEA110446468
GCA_946056605.1ContigCAMGKW000000000SAMEA110446683
GCA_946056895.1ContigCAMGLE000000000SAMEA110446586
GCA_946060545.1ContigCAMGOF000000000SAMEA110446558
GCA_946055395.1ContigCAMGFT000000000SAMEA110446502
GCA_946055715.1ContigCAMGGT000000000SAMEA110446430
GCA_946054985.1ContigCAMGEA000000000SAMEA110446498
GCA_946056845.1ContigCAMGLH000000000SAMEA110446566
GCA_946055275.1ContigCAMGFI000000000SAMEA110446495
GCA_946056245.1ContigCAMGIY000000000SAMEA110446598
GCA_946056065.1ContigCAMGIH000000000SAMEA110446625
GCA_946056575.1ContigCAMGKB000000000SAMEA110446595
GCA_946056075.1ContigCAMGIG000000000SAMEA110446618
GCA_946056315.1ContigCAMGJC000000000SAMEA110446527
GCA_946062045.1ContigCAMGTL000000000SAMEA110446573
GCA_946055865.1ContigCAMGHJ000000000SAMEA110446611
GCA_946061795.1ContigCAMGSK000000000SAMEA110446636
GCA_946056375.1ContigCAMGJF000000000SAMEA110446516
GCA_946055825.1ContigCAMGHI000000000SAMEA110446479
GCA_946062555.1ContigCAMGVQ000000000SAMEA110446521
GCA_946061615.1ContigCAMGSW000000000SAMEA110446551
GCA_946060865.1ContigCAMGPA000000000SAMEA110446578
GCA_946062195.1ContigCAMGUP000000000SAMEA110446673
GCA_946061805.1ContigCAMGSL000000000SAMEA110446609
GCA_946059765.1ContigCAMGNC000000000SAMEA110446562
GCA_946060665.1ContigCAMGOP000000000SAMEA110446627
GCA_946058425.1ContigCAMGMO000000000SAMEA110446565
GCA_946056505.1ContigCAMGKA000000000SAMEA110446564
GCA_946062345.1ContigCAMGUX000000000SAMEA110446656
GCA_946056175.1ContigCAMGIV000000000SAMEA110446545
GCA_946055295.1ContigCAMGFH000000000SAMEA110446500
GCA_946056055.1ContigCAMGIF000000000SAMEA110446594
GCA_946055655.1ContigCAMGGP000000000SAMEA110446433
GCA_946056035.1ContigCAMGIE000000000SAMEA110446590
GCA_946056755.1ContigCAMGKI000000000SAMEA110446641
GCA_946056345.1ContigCAMGJH000000000SAMEA110446676
GCA_946060705.1ContigCAMGOQ000000000SAMEA110446665
GCA_946061815.1ContigCAMGSZ000000000SAMEA110446533
GCA_946057625.1ContigCAMGME000000000SAMEA110446650
GCA_946056155.1ContigCAMGIP000000000SAMEA110446448
GCA_946055425.1ContigCAMGFQ000000000SAMEA110446443
GCA_946055785.1ContigCAMGGZ000000000SAMEA110446482
GCA_946060675.1ContigCAMGOM000000000SAMEA110446644
GCA_946055435.1ContigCAMGFU000000000SAMEA110446469
GCA_946057055.1ContigCAMGLK000000000SAMEA110446583
GCA_946060855.1ContigCAMGPQ000000000SAMEA110446640
GCA_946056615.1ContigCAMGKJ000000000SAMEA110446561
GCA_946055095.1ContigCAMGEM000000000SAMEA110446461
GCA_946059525.1ContigCAMGMT000000000SAMEA110446572
GCA_946056235.1ContigCAMGIZ000000000SAMEA110446574
GCA_946055565.1ContigCAMGFX000000000SAMEA110446493
GCA_946055745.1ContigCAMGGY000000000SAMEA110446465
GCA_946055315.1ContigCAMGFJ000000000SAMEA110446491
GCA_946055495.1ContigCAMGGI000000000SAMEA110446441
GCA_946056725.1ContigCAMGKY000000000SAMEA110446606
GCA_946062375.1ContigCAMGVD000000000SAMEA110446669
GCA_946062575.1ContigCAMGVR000000000SAMEA110446552
GCA_946055685.1ContigCAMGGS000000000SAMEA110446488
GCA_946055365.1ContigCAMGFM000000000SAMEA110446490
GCA_946061475.1ContigCAMGSB000000000SAMEA110446591
GCA_946060625.1ContigCAMGOJ000000000SAMEA110446674
GCA_946062155.1ContigCAMGTZ000000000SAMEA110446608
GCA_946057025.1ContigCAMGLW000000000SAMEA110446555
GCA_946062475.1ContigCAMGVM000000000SAMEA110446616
GCA_946062005.1ContigCAMGUF000000000SAMEA110446554
GCA_946062695.1ContigCAMGWL000000000SAMEA110446528
GCA_946062635.1ContigCAMGWF000000000SAMEA110446429
GCA_946061115.1ContigCAMGQJ000000000SAMEA110446556
GCA_946060535.1ContigCAMGOC000000000SAMEA110446630
GCA_946061195.1ContigCAMGPU000000000SAMEA110446654
GCA_946054975.1ContigCAMGEE000000000SAMEA110446486
GCA_946058415.1ContigCAMGMP000000000SAMEA110446659
GCA_946055625.1ContigCAMGGQ000000000SAMEA110446438
GCA_946054965.1ContigCAMGDY000000000SAMEA110446471
GCA_946055125.1ContigCAMGFF000000000SAMEA110446460
GCA_946055925.1ContigCAMGHS000000000SAMEA110446675
GCA_946054925.1ContigCAMGDT000000000SAMEA110446450
GCA_946060505.1ContigCAMGNV000000000SAMEA110446427
GCA_946062135.1ContigCAMGTV000000000SAMEA110446428
GCA_946055175.1ContigCAMGET000000000SAMEA110446473
GCA_946055885.1ContigCAMGHP000000000SAMEA110446632
GCA_946055445.1ContigCAMGGF000000000SAMEA110446445
GCA_946060255.1ContigCAMGNJ000000000SAMEA110446613
GCA_946061025.1ContigCAMGQM000000000SAMEA110446599
GCA_946056965.1ContigCAMGLM000000000SAMEA110446661
GCA_946056625.1ContigCAMGKF000000000SAMEA110446605
GCA_946062445.1ContigCAMGUY000000000SAMEA110446568
GCA_946060995.1ContigCAMGPJ000000000SAMEA110446518
GCA_946061375.1ContigCAMGRH000000000SAMEA110446531
GCA_946060345.1ContigCAMGNL000000000SAMEA110446682
GCA_946055135.1ContigCAMGEP000000000SAMEA110446455
GCA_946055895.1ContigCAMGHO000000000SAMEA110446685
GCA_946062515.1ContigCAMGVE000000000SAMEA110446423
GCA_946061495.1ContigCAMGSV000000000SAMEA110446652
GCA_946061075.1ContigCAMGQK000000000SAMEA110446581
GCA_946055985.1ContigCAMGHY000000000SAMEA110446615
GCA_946061885.1ContigCAMGTJ000000000SAMEA110446585
GCA_946062015.1ContigCAMGTK000000000SAMEA110446567
GCA_946060605.1ContigCAMGOO000000000SAMEA110446504
GCA_946060845.1ContigCAMGOX000000000SAMEA110446547
GCA_946062395.1ContigCAMGVF000000000SAMEA110446678
GCA_946061765.1ContigCAMGTC000000000SAMEA110446607
GCA_946062505.1ContigCAMGVW000000000SAMEA110446560
GCA_946062385.1ContigCAMGVH000000000SAMEA110446626
GCA_946056355.1ContigCAMGJB000000000SAMEA110446520
GCA_946061095.1ContigCAMGPN000000000SAMEA110446422
GCA_946062285.1ContigCAMGVC000000000SAMEA110446421
GCA_946055325.1ContigCAMGFG000000000SAMEA110446444
GCA_946056185.1ContigCAMGIR000000000SAMEA110446514
GCA_946055595.1ContigCAMGGD000000000SAMEA110446501
GCA_946055085.1ContigCAMGEJ000000000SAMEA110446462
GCA_946055075.1ContigCAMGEN000000000SAMEA110446431
GCA_946056515.1ContigCAMGJX000000000SAMEA110446511
GCA_946059695.1ContigCAMGNA000000000SAMEA110446424
GCA_946062485.1ContigCAMGVJ000000000SAMEA110446621
GCA_946061705.1ContigCAMGRN000000000SAMEA110446603
GCA_946057085.1ContigCAMGMC000000000SAMEA110446513
GCA_946061355.1ContigCAMGRE000000000SAMEA110446648
GCA_946061325.1ContigCAMGRG000000000SAMEA110446677
GCA_946061635.1ContigCAMGSJ000000000SAMEA110446680
GCA_946056905.1ContigCAMGLY000000000SAMEA110446662
GCA_946061975.1ContigCAMGUK000000000SAMEA110446588
GCA_946062355.1ContigCAMGVL000000000SAMEA110446660
GCA_946056885.1ContigCAMGLR000000000SAMEA110446529
GCA_946061465.1ContigCAMGRW000000000SAMEA110446623
GCA_946055545.1ContigCAMGGN000000000SAMEA110446458
GCA_946056285.1ContigCAMGJG000000000SAMEA110446534
GCA_946061165.1ContigCAMGPK000000000SAMEA110446508
GCA_946056195.1ContigCAMGIS000000000SAMEA110446577
GCA_946056045.1ContigCAMGID000000000SAMEA110446657
GCA_946055535.1ContigCAMGFZ000000000SAMEA110446434
GCA_946055335.1ContigCAMGFO000000000SAMEA110446492
GCA_946056135.1ContigCAMGIN000000000SAMEA110446649
GCA_946055285.1ContigCAMGFK000000000SAMEA110446454
GCA_946055405.1ContigCAMGFR000000000SAMEA110446439

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