ID 849494 - BioProject

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Accession: PRJEB53516 ID: 849494

EMG produced TPA metagenomics assembly of PRJNA389749 data set (Caecal Metagenome of Pigs).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA389749, and was assembled with metaSPAdes v3. More...

Accession	PRJEB53516
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 15-Jun-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2690
WGS master	211
Publications
PubMed	1
PMC	1
Other datasets
BioSample	211
Assembly	208

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

208
208

Assembly	WGS	BioSample	Taxonomy
GCA_945835235.1	CAMAIQ000000000	SAMEA110364112	Dechloromonas aromatica
GCA_945837115.1	CAMAND000000000	SAMEA110364089	Desulfovibrio piger
GCA_945836535.1	CAMALK000000000	SAMEA110364184	Lactobacillus johnsonii
GCA_945834045.1	CAMAGP000000000	SAMEA110364095	Megasphaera elsdenii
GCA_945835155.1	CAMAIN000000000	SAMEA110364279	Methanomethylophilus alvi
GCA_945836665.1	CAMALV000000000	SAMEA110364227	Methanomethylophilus alvi
GCA_945835715.1	CAMAJN000000000	SAMEA110364168	Methanomethylophilus alvi
GCA_945837865.1	CAMANW000000000	SAMEA110364090	Phascolarctobacterium succinatutens
GCA_945836085.1	CAMAKQ000000000	SAMEA110364291	Segatella copri
GCA_945837085.1	CAMANA000000000	SAMEA110364110	Subdoligranulum variabile
GCA_945834635.1	CAMAHU000000000	SAMEA110364190	Treponema berlinense
GCA_945834515.1	CAMAHX000000000	SAMEA110364242	uncultured Agathobacter sp.
GCA_945835645.1	CAMAJJ000000000	SAMEA110364155	uncultured Alistipes sp.
GCA_945835885.1	CAMAJR000000000	SAMEA110364233	uncultured Alphaproteobacteria bacterium
GCA_945836845.1	CAMAMK000000000	SAMEA110364207	uncultured Azospirillum sp.
GCA_945834575.1	CAMAHL000000000	SAMEA110364124	uncultured Azospirillum sp.
GCA_945837785.1	CAMANO000000000	SAMEA110364188	uncultured Bacteroidales bacterium
GCA_945836655.1	CAMALS000000000	SAMEA110364293	uncultured Bacteroidales bacterium
GCA_945836305.1	CAMAKW000000000	SAMEA110364093	uncultured Bacteroidales bacterium
GCA_945836465.1	CAMALH000000000	SAMEA110364084	uncultured Bacteroidales bacterium
GCA_945835565.1	CAMAJI000000000	SAMEA110364249	uncultured Bacteroidales bacterium
GCA_945836515.1	CAMALI000000000	SAMEA110364144	uncultured Bacteroidales bacterium
GCA_945833645.1	CAMAFO000000000	SAMEA110364221	uncultured Bacteroidales bacterium
GCA_945837795.1	CAMANU000000000	SAMEA110364290	uncultured Bacteroidales bacterium
GCA_945837155.1	CAMAMX000000000	SAMEA110364100	uncultured Bacteroidales bacterium
GCA_945837855.1	CAMANX000000000	SAMEA110364126	uncultured Bacteroidales bacterium
GCA_945836905.1	CAMAMN000000000	SAMEA110364102	uncultured Bacteroidales bacterium
GCA_945833815.1	CAMAGL000000000	SAMEA110364234	uncultured Bacteroidales bacterium
GCA_945833885.1	CAMAFY000000000	SAMEA110364263	uncultured Bacteroidales bacterium
GCA_945835935.1	CAMAJY000000000	SAMEA110364255	uncultured Bacteroidales bacterium
GCA_945834125.1	CAMAGT000000000	SAMEA110364247	uncultured Bacteroidales bacterium
GCA_945833655.1	CAMAFQ000000000	SAMEA110364175	uncultured Bacteroidales bacterium
GCA_945836575.1	CAMALP000000000	SAMEA110364116	uncultured Bacteroidales bacterium
GCA_945833875.1	CAMAGB000000000	SAMEA110364268	uncultured Bacteroidales bacterium
GCA_945836985.1	CAMAMV000000000	SAMEA110364111	uncultured Bacteroidales bacterium
GCA_945837215.1	CAMANG000000000	SAMEA110364223	uncultured Bacteroidales bacterium
GCA_945835255.1	CAMAIT000000000	SAMEA110364257	uncultured Bacteroidales bacterium
GCA_945836735.1	CAMALY000000000	SAMEA110364220	uncultured Bacteroidales bacterium
GCA_945837185.1	CAMAMZ000000000	SAMEA110364087	uncultured Bacteroidales bacterium
GCA_945833695.1	CAMAFP000000000	SAMEA110364191	uncultured Bacteroidales bacterium
GCA_945833905.1	CAMAGJ000000000	SAMEA110364150	uncultured Bacteroidales bacterium
GCA_945835635.1	CAMAJM000000000	SAMEA110364276	uncultured Bacteroidales bacterium
GCA_945834365.1	CAMAHI000000000	SAMEA110364158	uncultured Bacteroidales bacterium
GCA_945835725.1	CAMAJO000000000	SAMEA110364174	uncultured Bacteroidales bacterium
GCA_945836875.1	CAMAMH000000000	SAMEA110364103	uncultured Bacteroidales bacterium
GCA_945836645.1	CAMALR000000000	SAMEA110364260	uncultured Bacteroidales bacterium
GCA_945833915.1	CAMAGO000000000	SAMEA110364240	uncultured Bacteroidales bacterium
GCA_945836025.1	CAMAKG000000000	SAMEA110364187	uncultured Bacteroidales bacterium
GCA_945834455.1	CAMAHQ000000000	SAMEA110364203	uncultured Bacteroidales bacterium
GCA_945836035.1	CAMAKE000000000	SAMEA110364228	uncultured Bacteroidales bacterium
GCA_945835195.1	CAMAIP000000000	SAMEA110364285	uncultured Bacteroidales bacterium
GCA_945837035.1	CAMAMU000000000	SAMEA110364241	uncultured Bacteroidales bacterium
GCA_945835855.1	CAMAJP000000000	SAMEA110364272	uncultured Bacteroidales bacterium
GCA_945836075.1	CAMAKK000000000	SAMEA110364131	uncultured Bacteroidales bacterium
GCA_945836825.1	CAMAMF000000000	SAMEA110364172	uncultured Bacteroidales bacterium
GCA_945836755.1	CAMAMB000000000	SAMEA110364259	uncultured Bacteroidales bacterium
GCA_945836765.1	CAMAMM000000000	SAMEA110364236	uncultured Bacteroidales bacterium
GCA_945835275.1	CAMAIU000000000	SAMEA110364130	uncultured Bacteroidales bacterium
GCA_945835965.1	CAMAKA000000000	SAMEA110364121	uncultured Bacteroidales bacterium
GCA_945837205.1	CAMANE000000000	SAMEA110364132	uncultured Bacteroidales bacterium
GCA_945834015.1	CAMAGH000000000	SAMEA110364282	uncultured Bacteroidales bacterium
GCA_945834725.1	CAMAHN000000000	SAMEA110364195	uncultured Bacteroidales bacterium
GCA_945833945.1	CAMAFS000000000	SAMEA110364094	uncultured Bacteroidales bacterium
GCA_945833785.1	CAMAGF000000000	SAMEA110364251	uncultured Bacteroidales bacterium
GCA_945835075.1	CAMAIF000000000	SAMEA110364169	uncultured Bacteroides sp.
GCA_945836555.1	CAMALL000000000	SAMEA110364151	uncultured Bacteroides sp.
GCA_945834355.1	CAMAHB000000000	SAMEA110364104	uncultured Bacteroides sp.
GCA_945833835.1	CAMAFR000000000	SAMEA110364278	uncultured Bacteroides sp.
GCA_945835435.1	CAMAJD000000000	SAMEA110364212	uncultured Butyrivibrio sp.
GCA_945837825.1	CAMANR000000000	SAMEA110364222	uncultured Campylobacter sp.
GCA_945834395.1	CAMAHE000000000	SAMEA110364157	uncultured Clostridia bacterium
GCA_945834495.1	CAMAHJ000000000	SAMEA110364280	uncultured Clostridia bacterium
GCA_945836135.1	CAMAKT000000000	SAMEA110364198	uncultured Clostridia bacterium
GCA_945834965.1	CAMAHZ000000000	SAMEA110364162	uncultured Clostridia bacterium
GCA_945835865.1	CAMAJQ000000000	SAMEA110364164	uncultured Clostridia bacterium
GCA_945833825.1	CAMAGD000000000	SAMEA110364224	uncultured Clostridia bacterium
GCA_945836115.1	CAMAKL000000000	SAMEA110364185	uncultured Clostridia bacterium
GCA_945836855.1	CAMAMJ000000000	SAMEA110364170	uncultured Clostridia bacterium
GCA_945833955.1	CAMAGA000000000	SAMEA110364209	uncultured Clostridia bacterium
GCA_945836525.1	CAMALJ000000000	SAMEA110364178	uncultured Clostridia bacterium
GCA_945833795.1	CAMAFW000000000	SAMEA110364146	uncultured Clostridia bacterium
GCA_945837165.1	CAMANB000000000	SAMEA110364091	uncultured Clostridia bacterium
GCA_945837845.1	CAMANV000000000	SAMEA110364137	uncultured Clostridia bacterium
GCA_945833805.1	CAMAGG000000000	SAMEA110364201	uncultured Clostridia bacterium
GCA_945835115.1	CAMAII000000000	SAMEA110364231	uncultured Clostridia bacterium
GCA_945836895.1	CAMAMI000000000	SAMEA110364281	uncultured Clostridia bacterium
GCA_945836545.1	CAMALM000000000	SAMEA110364136	uncultured Clostridia bacterium
GCA_945836165.1	CAMAKP000000000	SAMEA110364292	uncultured Clostridia bacterium
GCA_945837305.1	CAMANJ000000000	SAMEA110364096	uncultured Clostridia bacterium
GCA_945837835.1	CAMANT000000000	SAMEA110364140	uncultured Clostridia bacterium
GCA_945836155.1	CAMAKS000000000	SAMEA110364214	uncultured Clostridia bacterium
GCA_945836055.1	CAMAKJ000000000	SAMEA110364210	uncultured Clostridia bacterium
GCA_945835425.1	CAMAJC000000000	SAMEA110364142	uncultured Clostridia bacterium
GCA_945836105.1	CAMAKM000000000	SAMEA110364165	uncultured Clostridia bacterium
GCA_945835305.1	CAMAIR000000000	SAMEA110364147	uncultured Clostridia bacterium
GCA_945835985.1	CAMAKC000000000	SAMEA110364182	uncultured Clostridia bacterium
GCA_945835535.1	CAMAJL000000000	SAMEA110364197	uncultured Clostridium sp.
GCA_945836785.1	CAMAMD000000000	SAMEA110364179	uncultured Clostridium sp.
GCA_945837645.1	CAMANK000000000	SAMEA110364133	uncultured Clostridium sp.
GCA_945836095.1	CAMAKR000000000	SAMEA110364262	uncultured Clostridium sp.
GCA_945834065.1	CAMAGR000000000	SAMEA110364273	uncultured Eubacterium sp.
GCA_945835895.1	CAMAJS000000000	SAMEA110364129	uncultured Fibrobacter sp.
GCA_945833975.1	CAMAGK000000000	SAMEA110364108	uncultured Fibrobacter sp.
GCA_945835355.1	CAMAIZ000000000	SAMEA110364109	uncultured Fibrobacter sp.
GCA_945835915.1	CAMAJU000000000	SAMEA110364122	uncultured Helicobacter sp.
GCA_945837125.1	CAMAMY000000000	SAMEA110364097	uncultured Lachnobacterium sp.
GCA_945833965.1	CAMAGN000000000	SAMEA110364269	uncultured Lachnobacterium sp.
GCA_945833775.1	CAMAGI000000000	SAMEA110364213	uncultured Lachnospiraceae bacterium
GCA_945837745.1	CAMANM000000000	SAMEA110364284	uncultured Lachnospiraceae bacterium
GCA_945834275.1	CAMAGW000000000	SAMEA110364181	uncultured Lachnospiraceae bacterium
GCA_945836355.1	CAMALD000000000	SAMEA110364105	uncultured Lachnospiraceae bacterium
GCA_945835875.1	CAMAJT000000000	SAMEA110364219	uncultured Lachnospiraceae bacterium
GCA_945836565.1	CAMALN000000000	SAMEA110364149	uncultured Lachnospiraceae bacterium
GCA_945834545.1	CAMAHO000000000	SAMEA110364229	uncultured Lachnospiraceae bacterium
GCA_945834985.1	CAMAIA000000000	SAMEA110364217	uncultured Lachnospiraceae bacterium
GCA_945835955.1	CAMAJZ000000000	SAMEA110364167	uncultured Lachnospiraceae bacterium
GCA_945835185.1	CAMAIO000000000	SAMEA110364143	uncultured Lachnospiraceae bacterium
GCA_945834095.1	CAMAGC000000000	SAMEA110364287	uncultured Lachnospiraceae bacterium
GCA_945836705.1	CAMALW000000000	SAMEA110364193	uncultured Lachnospiraceae bacterium
GCA_945836495.1	CAMALG000000000	SAMEA110364085	uncultured Lactobacillus sp.
GCA_945836915.1	CAMAMO000000000	SAMEA110364211	uncultured Mediterranea sp.
GCA_945835055.1	CAMAIE000000000	SAMEA110364206	uncultured Mediterranea sp.
GCA_945836805.1	CAMAMG000000000	SAMEA110364107	uncultured Mitsuokella sp.
GCA_945835945.1	CAMAJX000000000	SAMEA110364154	uncultured Mollicutes bacterium
GCA_945837345.1	CAMANI000000000	SAMEA110364123	uncultured Mollicutes bacterium
GCA_945834085.1	CAMAGU000000000	SAMEA110364163	uncultured Myxococcales bacterium
GCA_945837895.1	CAMAOA000000000	SAMEA110364289	uncultured Parabacteroides sp.
GCA_945834055.1	CAMAGE000000000	SAMEA110364161	uncultured Prevotella sp.
GCA_945835445.1	CAMAJA000000000	SAMEA110364288	uncultured Prevotella sp.
GCA_945837875.1	CAMANY000000000	SAMEA110364086	uncultured Prevotella sp.
GCA_945833995.1	CAMAGM000000000	SAMEA110364283	uncultured Prevotella sp.
GCA_945835995.1	CAMAKD000000000	SAMEA110364243	uncultured Prevotella sp.
GCA_945836695.1	CAMALZ000000000	SAMEA110364277	uncultured Prevotella sp.
GCA_945836325.1	CAMAKX000000000	SAMEA110364134	uncultured Prevotella sp.
GCA_945836045.1	CAMAKH000000000	SAMEA110364215	uncultured Prevotella sp.
GCA_945835975.1	CAMAKB000000000	SAMEA110364275	uncultured Prevotella sp.
GCA_945835145.1	CAMAIL000000000	SAMEA110364245	uncultured Prevotella sp.
GCA_945836015.1	CAMAKF000000000	SAMEA110364252	uncultured Prevotella sp.
GCA_945836715.1	CAMAMA000000000	SAMEA110364216	uncultured Prevotella sp.
GCA_945834405.1	CAMAHD000000000	SAMEA110364153	uncultured Prevotella sp.
GCA_945835455.1	CAMAJE000000000	SAMEA110364250	uncultured Prevotella sp.
GCA_945833755.1	CAMAFV000000000	SAMEA110364171	uncultured Prevotella sp.
GCA_945834625.1	CAMAHR000000000	SAMEA110364189	uncultured Prevotella sp.
GCA_945834605.1	CAMAHP000000000	SAMEA110364244	uncultured Prevotella sp.
GCA_945834435.1	CAMAHS000000000	SAMEA110364208	uncultured Prevotella sp.
GCA_945834375.1	CAMAHF000000000	SAMEA110364270	uncultured Prevotella sp.
GCA_945837765.1	CAMANN000000000	SAMEA110364177	uncultured Prevotella sp.
GCA_945834235.1	CAMAGV000000000	SAMEA110364237	uncultured Prevotella sp.
GCA_945835905.1	CAMAJV000000000	SAMEA110364246	uncultured Prevotella sp.
GCA_945837775.1	CAMANP000000000	SAMEA110364254	uncultured Prevotella sp.
GCA_945836065.1	CAMAKI000000000	SAMEA110364204	uncultured Prevotella sp.
GCA_945836885.1	CAMAME000000000	SAMEA110364248	uncultured Prevotellaceae bacterium
GCA_945836635.1	CAMALT000000000	SAMEA110364267	uncultured Prevotellaceae bacterium
GCA_945836585.1	CAMALO000000000	SAMEA110364274	uncultured Prevotellaceae bacterium
GCA_945835485.1	CAMAJF000000000	SAMEA110364202	uncultured Prevotellaceae bacterium
GCA_945835495.1	CAMAJG000000000	SAMEA110364114	uncultured Prevotellaceae bacterium
GCA_945836625.1	CAMALU000000000	SAMEA110364186	uncultured Prevotellaceae bacterium
GCA_945836205.1	CAMAKV000000000	SAMEA110364088	uncultured Prevotellaceae bacterium
GCA_945835615.1	CAMAJK000000000	SAMEA110364230	uncultured Prevotellaceae bacterium
GCA_945835165.1	CAMAIM000000000	SAMEA110364225	uncultured Prevotellaceae bacterium
GCA_945833925.1	CAMAFX000000000	SAMEA110364232	uncultured Prevotellaceae bacterium
GCA_945835135.1	CAMAIK000000000	SAMEA110364253	uncultured Prevotellaceae bacterium
GCA_945834655.1	CAMAHV000000000	SAMEA110364226	uncultured Prevotellaceae bacterium
GCA_945837805.1	CAMANS000000000	SAMEA110364261	uncultured Rhodospirillaceae bacterium
GCA_945836255.1	CAMAKU000000000	SAMEA110364092	uncultured Roseburia sp.
GCA_945835085.1	CAMAIG000000000	SAMEA110364166	uncultured Ruminococcus sp.
GCA_945834995.1	CAMAIB000000000	SAMEA110364180	uncultured Ruminococcus sp.
GCA_945835125.1	CAMAIJ000000000	SAMEA110364266	uncultured Selenomonadaceae bacterium
GCA_945834465.1	CAMAHH000000000	SAMEA110364098	uncultured Solobacterium sp.
GCA_945835025.1	CAMAID000000000	SAMEA110364183	uncultured Spirochaetales bacterium
GCA_945836375.1	CAMAKY000000000	SAMEA110364113	uncultured Spirochaetales bacterium
GCA_945837225.1	CAMANF000000000	SAMEA110364194	uncultured Spirochaetales bacterium
GCA_945834385.1	CAMAGZ000000000	SAMEA110364159	uncultured Streptococcus sp.
GCA_945834535.1	CAMAHM000000000	SAMEA110364119	uncultured Sutterella sp.
GCA_945835375.1	CAMAIW000000000	SAMEA110364135	uncultured Treponema sp.
GCA_945833725.1	CAMAFU000000000	SAMEA110364176	uncultured Treponema sp.
GCA_945834315.1	CAMAGY000000000	SAMEA110364152	uncultured Treponema sp.
GCA_945837755.1	CAMANL000000000	SAMEA110364239	uncultured Treponema sp.
GCA_945834645.1	CAMAHW000000000	SAMEA110364125	uncultured Treponema sp.
GCA_945834305.1	CAMAHA000000000	SAMEA110364101	uncultured Treponema sp.
GCA_945836125.1	CAMAKO000000000	SAMEA110364173	uncultured Treponema sp.
GCA_945836345.1	CAMALA000000000	SAMEA110364141	uncultured Veillonellaceae bacterium
GCA_945835325.1	CAMAIX000000000	SAMEA110364294	uncultured Veillonellaceae bacterium
GCA_945834475.1	CAMAHK000000000	SAMEA110364200	uncultured Verrucomicrobiota bacterium
GCA_945834415.1	CAMAHG000000000	SAMEA110364156	uncultured Verrucomicrobiota bacterium
GCA_945834565.1	CAMAHY000000000	SAMEA110364127	uncultured Verrucomicrobiota bacterium
GCA_945835365.1	CAMAIV000000000	SAMEA110364258	uncultured bacterium
GCA_945836145.1	CAMAKN000000000	SAMEA110364199	uncultured bacterium
GCA_945835105.1	CAMAIH000000000	SAMEA110364235	uncultured bacterium
GCA_945836335.1	CAMALB000000000	SAMEA110364128	uncultured bacterium
GCA_945835415.1	CAMAJB000000000	SAMEA110364160	uncultured bacterium
GCA_945834425.1	CAMAHC000000000	SAMEA110364099	uncultured bacterium
GCA_945834035.1	CAMAFT000000000	SAMEA110364256	uncultured bacterium
GCA_945834185.1	CAMAGS000000000	SAMEA110364286	uncultured bacterium
GCA_945833935.1	CAMAFZ000000000	SAMEA110364218	uncultured bacterium
GCA_945836315.1	CAMALC000000000	SAMEA110364138	uncultured bacterium
GCA_945835505.1	CAMAJH000000000	SAMEA110364145	uncultured bacterium
GCA_945837815.1	CAMANQ000000000	SAMEA110364196	uncultured bacterium
GCA_945837885.1	CAMANZ000000000	SAMEA110364271	uncultured bacterium
GCA_945835205.1	CAMAIS000000000	SAMEA110364139	uncultured bacterium
GCA_945836365.1	CAMAKZ000000000	SAMEA110364118	uncultured bacterium
GCA_945837055.1	CAMAMS000000000	SAMEA110364148	uncultured bacterium
GCA_945835345.1	CAMAIY000000000	SAMEA110364264	uncultured bacterium
GCA_945834215.1	CAMAGX000000000	SAMEA110364120	uncultured bacterium
GCA_945834695.1	CAMAHT000000000	SAMEA110364205	uncultured bacterium
GCA_945833895.1	CAMAGQ000000000	SAMEA110364265	uncultured bacterium
GCA_945835015.1	CAMAIC000000000	SAMEA110364192	uncultured bacterium
GCA_945836835.1	CAMAML000000000	SAMEA110364238	uncultured cyanobacterium

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EMG produced TPA metagenomics assembly of PRJNA389749 data set (Caecal Metagenome of Pigs).

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