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Accession: PRJNA358857 ID: 358857

Lactiplantibacillus plantarum

Lactiplantibacillus plantarum Genome sequencing and assembly

See Genome Information for Lactiplantibacillus plantarum
This is a multiisolate project about Whole genome resequencing of probiotic Lactobacillus plantarum P-8.
AccessionPRJNA358857
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismLactiplantibacillus plantarum[Taxonomy ID: 1590]
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus; Lactiplantibacillus plantarum
PublicationsSong Y et al., "Genomic Variations in Probiotic Lactobacillus plantarum P-8 in the Human and Rat Gut.", Front Microbiol, 2018;9:893
SubmissionRegistration date: 26-Feb-2019
Inner Mongolia Agricultural University
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)34550
WGS master92
Protein Sequences267271
Publications
PubMed1
PMC1
Other datasets
BioSample92
Assembly92
Assembly details:
Assembly levelNumber of Assemblies
91
1
92
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_017654565.1ContigMSXD00000000SAMN06186685
R7-1-2
GCA_004301425.1ScaffoldMSUX00000000SAMN06186627
A6-1
GCA_004301135.1ScaffoldMSUI00000000SAMN06186612
Y2-1
GCA_004302255.1ScaffoldMSWM00000000SAMN06186668
R4-2-1
GCA_004302715.1ScaffoldMSXL00000000SAMN06186693
R14-3-2
GCA_004302745.1ScaffoldMSXK00000000SAMN06186692
R14-3-1
GCA_004302725.1ScaffoldMSXJ00000000SAMN06186691
R14-2-2
GCA_004302695.1ScaffoldMSXI00000000SAMN06186690
R14-2-1
GCA_004302685.1ScaffoldMSXH00000000SAMN06186689
R14-1-2
GCA_004302645.1ScaffoldMSXG00000000SAMN06186688
R14-1-1
GCA_004302625.1ScaffoldMSXF00000000SAMN06186687
R7-2-2
GCA_004302615.1ScaffoldMSXE00000000SAMN06186686
R7-2-1
GCA_004302585.1ScaffoldMSXC00000000SAMN06186684
R7-1-1
GCA_004302535.1ScaffoldMSXB00000000SAMN06186683
R6-3-2
GCA_004302515.1ScaffoldMSXA00000000SAMN06186682
R6-3-1
GCA_004302495.1ScaffoldMSWZ00000000SAMN06186681
R6-2-2
GCA_004302485.1ScaffoldMSWY00000000SAMN06186680
R6-2-1
GCA_004302505.1ScaffoldMSWX00000000SAMN06186679
R6-1-2
GCA_004302445.1ScaffoldMSWW00000000SAMN06186678
R6-1-1
GCA_004302405.1ScaffoldMSWV00000000SAMN06186677
R5-3-2
GCA_004302415.1ScaffoldMSWU00000000SAMN06186676
R5-3-1
GCA_004302395.1ScaffoldMSWT00000000SAMN06186675
R5-2-2
GCA_004302385.1ScaffoldMSWS00000000SAMN06186674
R5-2-1
GCA_004302345.1ScaffoldMSWR00000000SAMN06186673
R5-1-2
GCA_004302315.1ScaffoldMSWQ00000000SAMN06186672
R5-1-1
GCA_004302285.1ScaffoldMSWP00000000SAMN06186671
R4-3-2
GCA_004302305.1ScaffoldMSWO00000000SAMN06186670
R4-3-1
GCA_004302295.1ScaffoldMSWN00000000SAMN06186669
R4-2-2
GCA_004302205.1ScaffoldMSWL00000000SAMN06186667
R4-1-1
GCA_004302215.1ScaffoldMSWK00000000SAMN06186666
R3-3-2
GCA_004302195.1ScaffoldMSWJ00000000SAMN06186665
R3-3-1
GCA_004302185.1ScaffoldMSWI00000000SAMN06186664
R3-2-2
GCA_004302135.1ScaffoldMSWH00000000SAMN06186663
R3-2-1
GCA_004302125.1ScaffoldMSWG00000000SAMN06186662
R3-1-2
GCA_004302115.1ScaffoldMSWF00000000SAMN06186661
R3-1-1
GCA_004302105.1ScaffoldMSWE00000000SAMN06186660
R2-3-2
GCA_004302065.1ScaffoldMSWD00000000SAMN06186659
R2-3-1
GCA_004302055.1ScaffoldMSWC00000000SAMN06186658
R2-2-2
GCA_004302035.1ScaffoldMSWB00000000SAMN06186657
R2-2-1
GCA_004302005.1ScaffoldMSWA00000000SAMN06186656
R2-1-2
GCA_004301995.1ScaffoldMSVZ00000000SAMN06186655
R2-1-1
GCA_004301975.1ScaffoldMSVY00000000SAMN06186654
R1-3-2
GCA_004301955.1ScaffoldMSVX00000000SAMN06186653
R1-3-1
GCA_004301875.1ScaffoldMSVT00000000SAMN06186649
R1-1-1
GCA_004301865.1ScaffoldMSVS00000000SAMN06186648
B14-2
GCA_004301815.1ScaffoldMSVR00000000SAMN06186647
B14-1
GCA_004301795.1ScaffoldMSVQ00000000SAMN06186646
B7-2
GCA_004301805.1ScaffoldMSVP00000000SAMN06186645
B7-1
GCA_004301775.1ScaffoldMSVO00000000SAMN06186644
B6-2
GCA_004301765.1ScaffoldMSVN00000000SAMN06186643
B6-1
GCA_004301725.1ScaffoldMSVM00000000SAMN06186642
B5-2
GCA_004301695.1ScaffoldMSVL00000000SAMN06186641
B5-1
GCA_004301705.1ScaffoldMSVK00000000SAMN06186640
B4-2
GCA_004301685.1ScaffoldMSVJ00000000SAMN06186639
B4-1
GCA_004301655.1ScaffoldMSVI00000000SAMN06186638
B3-2
GCA_004301645.1ScaffoldMSVH00000000SAMN06186637
B3-1
GCA_004301565.1ScaffoldMSVG00000000SAMN06186636
B2-2
GCA_004301595.1ScaffoldMSVF00000000SAMN06186635
B2-1
GCA_004301585.1ScaffoldMSVE00000000SAMN06186634
B1-2
GCA_004301545.1ScaffoldMSVD00000000SAMN06186633
B1-1
GCA_004301555.1ScaffoldMSVC00000000SAMN06186632
A14-2
GCA_004301485.1ScaffoldMSVB00000000SAMN06186631
A14-1
GCA_004301455.1ScaffoldMSVA00000000SAMN06186630
A7-2
GCA_004301435.1ScaffoldMSUZ00000000SAMN06186629
A7-1
GCA_004301445.1ScaffoldMSUY00000000SAMN06186628
A6-2
GCA_004301395.1ScaffoldMSUW00000000SAMN06186626
A5-2
GCA_004301355.1ScaffoldMSUV00000000SAMN06186625
A5-1
GCA_004301345.1ScaffoldMSUU00000000SAMN06186624
A4-2
GCA_004301335.1ScaffoldMSUT00000000SAMN06186623
A4-1
GCA_004301325.1ScaffoldMSUS00000000SAMN06186622
A3-2
GCA_004301305.1ScaffoldMSUR00000000SAMN06186621
A3-1
GCA_004301255.1ScaffoldMSUQ00000000SAMN06186620
A2-2
GCA_004301235.1ScaffoldMSUP00000000SAMN06186619
A2-1
GCA_004301245.1ScaffoldMSUO00000000SAMN06186618
A1-2
GCA_004301225.1ScaffoldMSUN00000000SAMN06186617
A1-1
GCA_004301205.1ScaffoldMSUM00000000SAMN06186616
Y2-5
GCA_004301155.1ScaffoldMSUL00000000SAMN06186615
Y2-4
GCA_004301125.1ScaffoldMSUJ00000000SAMN06186613
Y2-2
GCA_004301075.1ScaffoldMSUH00000000SAMN06186611
M4-4
GCA_004301055.1ScaffoldMSUG00000000SAMN06186610
M4-3
GCA_004301025.1ScaffoldMSUF00000000SAMN06186609
M4-2
GCA_004301045.1ScaffoldMSUE00000000SAMN06186608
M4-1
GCA_004301035.1ScaffoldMSUD00000000SAMN06186607
E6-6
GCA_004300955.1ScaffoldMSUC00000000SAMN06186606
E6-5
GCA_004300945.1ScaffoldMSUB00000000SAMN06186605
E6-4
GCA_004300965.1ScaffoldMSUA00000000SAMN06186604
E6-3
GCA_004300935.1ScaffoldMSTZ00000000SAMN06186603
E6-2
GCA_004300925.1ScaffoldMSTY00000000SAMN06186602
E6-1
GCA_004301885.1ScaffoldMSVU00000000SAMN06186650
R1-1-2
GCA_004301145.1ScaffoldMSUK00000000SAMN06186614
Y2-3
GCA_004301905.1ScaffoldMSVW00000000SAMN06186652
R1-2-2
GCA_004301915.1ScaffoldMSVV00000000SAMN06186651
R1-2-1

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