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Links from Protein

Accession: PRJNA542320 ID: 542320

Bacteria

Bacteria Genome sequencing and assembly

Neonatal late-onset sepsis is a devastating disease for which pre-term infants are highly susceptible. More...
AccessionPRJNA542320
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsSinger JR et al., "Preventing dysbiosis of the neonatal mouse intestinal microbiome protects against late-onset sepsis.", Nat Med, 2019 Nov;25(11):1772-1782
Grants
  • "Role of Ror?t positive Innate Lymphoid Cells in Neonatal Intestinal Barrier Development" (Grant ID F30 DK105680, National Institute of Diabetes and Digestive and Kidney Diseases)
SubmissionRegistration date: 13-Feb-2020
University of Alabama at Birmingham
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)37
WGS master25
Genomic DNA12
SRA Experiments43
Protein Sequences15325
Publications
PubMed1
PMC1
Other datasets
BioSample38
Assembly30
Supplementary data
Base modification15
Assembly details:
Assembly levelNumber of Assemblies
5
25
30
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_010586985.1Complete genomeSAMN11618737
Xen39
GCA_010586945.1Complete genomeSAMN11618740
202195
GCA_010586925.1Complete genomeSAMN11618738
G2A
GCA_010586905.1Complete genomeSAMN11618739
V10
GCA_010581305.1ContigVKCP00000000
SAMN11618713
1V1P1
GCA_010581295.1ContigVKCQ00000000
SAMN11618712
1S2P1
GCA_010581285.1ContigVKCO00000000
SAMN11618714
1V1P2
GCA_010581225.1ContigVKCL00000000
SAMN11618717
2V1P1
GCA_010581215.1ContigVKCM00000000
SAMN11618716
2S2P1
GCA_010581195.1ContigVKCK00000000
SAMN11618718
2V1P2
GCA_010581185.1ContigVKCJ00000000
SAMN11618719
3S2P1
GCA_010581165.1ContigVKCI00000000
SAMN11618720
3V1P1
GCA_010581125.1ContigVKCH00000000
SAMN11618721
3V1P2
GCA_010581105.1ContigVKCG00000000
SAMN11618722
3V2P2
GCA_010581115.1ContigVKCE00000000
SAMN11618724
SM1F2
GCA_010581265.1ContigVKCN00000000
SAMN11618715
1V2P2
GCA_010581085.1ContigVKCF00000000
SAMN11618723
SM1F1
GCA_010581065.1ContigVKCD00000000
SAMN11618725
SM2F2
GCA_010581005.1ContigVKBX00000000
SAMN11618731
VM1V1
GCA_010581015.1ContigVKCC00000000
SAMN11618726
SM2V1
GCA_010580985.1ContigVKCB00000000
SAMN11618727
SM2V2
GCA_010580995.1ContigVKBY00000000
SAMN11618730
VM1F3
GCA_010580965.1ContigVKCA00000000
SAMN11618728
VM1F1
GCA_010580905.1ContigVKBV00000000
SAMN11618733
VM1V3
GCA_010580865.1ContigVKBT00000000
SAMN11618735
VM2V2
GCA_010580895.1ContigVKBU00000000
SAMN11618734
VM2F3
GCA_010580885.1ContigVKBW00000000
SAMN11618732
VM1V2
GCA_010580875.1ContigVKBS00000000
SAMN11618736
VM2V3
GCA_010745745.1ContigVKBZ00000000
SAMN11618729
VM1F2
GCA_010587025.1Complete genomeSAMN11618741
G1
SRA Data Details
ParameterValue
Data volume, Gbases97
Data volume, Mbytes37792

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