Lactiplantibacillus (ID 674638) - BioProject

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Accession: PRJNA674638 ID: 674638

Lactiplantibacillus

Cucumber fermentation organisms

A collection of sequences from isolates derived from cucumber fermentation.

Accession	PRJNA674638
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Page CA et al., "Genome Sequences for Levilactobacillus brevis Autochthonous to Commercial Cucumber Fermentations.", Microbiol Resour Announc, 2022 May 19;11(5):e0002922
Submission	Registration date: 23-Jun-2021 USDA-ARS - USDA Agricultural Research Service
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	134
WGS master	84
Genomic DNA	50
SRA Experiments	108
Protein Sequences	74061
Publications
PubMed	1
PMC	1
Other datasets
BioSample	111
Assembly	104

Assembly details:

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Assembly level

Number of Assemblies

11
9
1
83
104

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_032190615.1	JAVLAT000000000		SAMN37196901	1.2.1	Brucella pseudogrignonensis
GCA_032190555.1	JAVKYT000000000		SAMN37184526	7.2.6	Companilactobacillus alimentarius
GCA_032190835.1	JAVLAJ000000000		SAMN37199266	3.2.13	Enterobacter cancerogenus
GCA_032198945.1		1	SAMN37199274	3.2.17	Enterobacter cancerogenus
GCA_032190795.1	JAVLAI000000000		SAMN37199265	3.2.8	Enterobacter hormaechei
GCA_032369155.1		1	SAMN37196890	1.2.3	Enterobacter hormaechei
GCA_025740255.1	JANIER000000000		SAMN29939814	7.8.18	Enterobacter wuhouensis
GCA_032199685.1		1	SAMN37199273	3.8.4	Hafnia alvei
GCA_032173255.1		1	SAMN37196903	1.8.5	Kluyvera cryocrescens
GCA_018993965.2	JAHLEN000000000		SAMN19608004	LA0445	Lactiplantibacillus pentosus
GCA_032190575.1	JAVLAU000000000		SAMN37196904	7.2.15	Lactiplantibacillus pentosus
GCA_032190695.1	JAVLAO000000000		SAMN37196896	1.8.9	Lactiplantibacillus pentosus
GCA_032190675.1	JAVLAQ000000000		SAMN37196898	7.8.46	Lactiplantibacillus pentosus
GCA_032190655.1	JAVLAP000000000		SAMN37196897	14.8.42	Lactiplantibacillus pentosus
GCA_032190735.1	JAVLAN000000000		SAMN37196895	1.8.18	Lactiplantibacillus pentosus
GCA_032195525.1		4	SAMN37362701	7.8.2	Lactiplantibacillus pentosus
GCA_021384425.1	JAJHUS000000000		SAMN22818097	1.2.48	Lactiplantibacillus pentosus
GCA_018993275.1	JAGYGV000000000		SAMN18938210	7.8.11	Lactiplantibacillus pentosus
GCA_018993725.1	JAGXBS000000000		SAMN18985901	3.2.36	Lactiplantibacillus pentosus
GCA_018991465.1	JAGXBR000000000		SAMN18985902	7.8.46	Lactiplantibacillus pentosus
GCA_018991425.1	JAGXBP000000000		SAMN18985997	14.2.3	Lactiplantibacillus pentosus
GCA_018991375.1	JAGWDS000000000		SAMN18977514	7.2.11	Lactiplantibacillus pentosus
GCA_018991365.1	JAGWDV000000000		SAMN18977394	1.2.7	Lactiplantibacillus pentosus
GCA_018991355.1	JAGYGY000000000		SAMN18940221	1.8.6	Lactiplantibacillus pentosus
GCA_018991345.1	JAGYGX000000000		SAMN18939723	1.2.13	Lactiplantibacillus pentosus
GCA_018991285.1	JAGYGW000000000		SAMN18939715	1.2.11	Lactiplantibacillus pentosus
GCA_018991565.1	JAGXBU000000000		SAMN18987094	3.8.45	Lactiplantibacillus pentosus
GCA_018991535.1	JAGXBV000000000		SAMN18987059	7.8.2	Lactiplantibacillus pentosus
GCA_018993945.1	JAHLEP000000000		SAMN19608333	1.8.9	Lactiplantibacillus pentosus
GCA_018993665.1	JAGXBW000000000		SAMN18987058	7.2.20	Lactiplantibacillus pentosus
GCA_018993635.1	JAGXBT000000000		SAMN18987114	1.8.18	Lactiplantibacillus pentosus
GCA_018993625.1	JAGXBQ000000000		SAMN18985924	14.2.16	Lactiplantibacillus pentosus
GCA_018993585.1	JAGYHB000000000		SAMN18942680	MU0445	Lactiplantibacillus pentosus
GCA_018993525.1	JAGXBO000000000		SAMN18982119	14.8.42	Lactiplantibacillus pentosus
GCA_018993485.1	JAGWDT000000000		SAMN18977487	7.2.23	Lactiplantibacillus pentosus
GCA_018993495.1	JAGYHA000000000		SAMN18942672	3.2.37	Lactiplantibacillus pentosus
GCA_018993445.1	JAGWDU000000000		SAMN18977471	7.2.15	Lactiplantibacillus pentosus
GCA_018993345.1	JAGYGZ000000000		SAMN18942671	3.8.24	Lactiplantibacillus pentosus
GCA_032190715.1	JAVLAR000000000		SAMN37196899	7.8.4	Lactiplantibacillus plantarum
GCA_018993325.1	JAGYGT000000000		SAMN18938100	T1R2B	Lactiplantibacillus plantarum
GCA_018993285.1	JAGYGR000000000		SAMN18937939	7.8.4	Lactiplantibacillus plantarum
GCA_018991195.1	JAGYGQ000000000		SAMN18935462	3.2.8	Lactiplantibacillus plantarum
GCA_018991855.1	JAGXCA000000000		SAMN16675177	3.2.8	Lactiplantibacillus plantarum
GCA_018991255.1	JAGYGU000000000		SAMN18938172	30.2.29	Lactiplantibacillus sp. 30.2.29
GCA_018991185.1	JAGYGS000000000		SAMN18938099	7.2.4	Lactiplantibacillus sp. 7.2.4
GCA_033879915.1		1	SAMN37326198	NCK401	Lactococcus lactis
GCA_032171455.1		1	SAMN37196902	LA0312	Lactococcus lactis
GCA_018991645.1	JAGXCF000000000		SAMN18989267	1.8.12	Lactococcus lactis
GCA_018991605.1	JAGXIX000000000		SAMN18993399	LA0312	Lactococcus lactis
GCA_032190815.1	JAVLAK000000000		SAMN37199275	3.8.43	Latilactobacillus curvatus
GCA_025770045.1	JANKZD000000000		SAMN30195404	7.8.8	Leclercia adecarboxylata
GCA_025770015.1	JANKZC000000000		SAMN30195403	7.8.20	Leclercia adecarboxylata
GCA_032196625.1		1	SAMN37383316	1.2.7	Leclercia pneumoniae
GCA_025728255.1	JANHLP000000000		SAMN29833711	1.2.7	Leclercia pneumoniae
GCA_018991475.1	JAGYGO000000000		SAMN18988549	3.8.12	Leuconostoc citreum
GCA_018993745.1	JAGYGP000000000		SAMN18988370	1.2.22	Leuconostoc fallax
GCA_018993775.1	JAGXCE000000000		SAMN18988201	1.2.28	Leuconostoc lactis
GCA_033881405.1		2	SAMN37326200	FFL48	Leuconostoc mesenteroides
GCA_018991785.1	JAHLEO000000000		SAMN19608125	1.2.47	Leuconostoc mesenteroides
GCA_021384395.1	JAJHOC000000000		SAMN22818098	7.2.12	Levilactobacillus brevis
GCA_021384415.1	JAJHNO000000000		SAMN22657236	3.8.25	Levilactobacillus brevis
GCA_021384405.1	JAJHVN000000000		SAMN22818100	7.2.41	Levilactobacillus brevis
GCA_021384615.1	JAJHVT000000000		SAMN22818106	30.2.29	Levilactobacillus brevis
GCA_021384595.1	JAJHVU000000000		SAMN22818107	30.8.38	Levilactobacillus brevis
GCA_021384565.1	JAJHVR000000000		SAMN22818104	7.8.34	Levilactobacillus brevis
GCA_021384555.1	JAJHVQ000000000		SAMN22818103	7.8.33	Levilactobacillus brevis
GCA_021384515.1	JAJHVS000000000		SAMN22818105	7.8.43	Levilactobacillus brevis
GCA_021384505.1	JAJHVO000000000		SAMN22818101	7.2.49	Levilactobacillus brevis
GCA_021384495.1	JAJHVP000000000		SAMN22818102	7.2.13	Levilactobacillus brevis
GCA_021384445.1	JAJHVM000000000		SAMN22818099	7.2.40	Levilactobacillus brevis
GCA_018993685.1	JAGXCD000000000		SAMN18988741	14.2.24	Levilactobacillus brevis
GCA_018991675.1	JAGXIY000000000		SAMN18995136	3.2.41	Levilactobacillus brevis
GCA_018991505.1	JAGXCC000000000		SAMN18988756	14.2.10	Levilactobacillus brevis
GCA_032190775.1	JAVLAL000000000		SAMN37196892	1.2.9	Levilactobacillus namurensis
GCA_032190755.1	JAVLAM000000000		SAMN37196893	3.8.38	Levilactobacillus namurensis
GCA_032197885.1		1	SAMN37196894	90.8.26	Levilactobacillus namurensis
GCA_032190635.1	JAVLAS000000000		SAMN37196900	90.8.36	Levilactobacillus zymae
GCA_032173795.1		1	SAMN37362705	Lys24	Lysinibacillus capsici
GCA_033879655.1		1	SAMN37326197	Lm01	Lysinibacillus capsici
GCA_033880585.1		1	SAMN37326199	Ll15	Lysinibacillus louembei
GCA_032200625.1		1	SAMN37199268	1.2.4	Pantoea agglomerans
GCA_025769915.1	JANRHF000000000		SAMN30243853	3.2.1	Pantoea ananatis
GCA_025770335.1	JANJPN000000000		SAMN30085977	14.2.45	Pediococcus ethanolidurans
GCA_025770405.1	JANQAM000000000		SAMN30149066	1.2.28	Pediococcus ethanolidurans
GCA_025770395.1	JANQAL000000000		SAMN30149057	3.8.1	Pediococcus ethanolidurans
GCA_025770355.1	JANJYK000000000		SAMN30149044	14.2.5	Pediococcus ethanolidurans
GCA_025773805.1	JANQCL000000000		SAMN30214252	30.2.11	Pediococcus ethanolidurans
GCA_018993885.1	JAGXJE000000000		SAMN18995149	NC579	Pediococcus ethanolidurans
GCA_018991695.1	JAGXJC000000000		SAMN18995139	7.8.48	Pediococcus ethanolidurans
GCA_033882205.1		3	SAMN37326201	LA0061	Pediococcus pentosaceus
GCA_025770495.1	JANKYZ000000000		SAMN30150222	7.2.43	Pediococcus pentosaceus
GCA_025770455.1	JANKZA000000000		SAMN30150223	3.2.19	Pediococcus pentosaceus
GCA_025770465.1	JANKZB000000000		SAMN30150224	7.2.36	Pediococcus pentosaceus
GCA_032164165.1		1	SAMN37199269	7.8.24	Pseudomonas inefficax
GCA_033879595.1		1	SAMN37326195	1.8.4	Pseudomonas putida
GCA_032164355.1		1	SAMN37199272	3.2.4	Siccibacter colletis
GCA_032378615.1	JAVYIJ000000000		SAMN37383412	7.2.7	Stenotrophomonas indicatrix
GCA_032163505.1		2	SAMN37199267	30.8.10	Streptococcus parasanguinis
GCA_025770435.1	JANQAN000000000		SAMN30149852	7.8.34	Weissella cibaria
GCA_018991795.1	JAGXJD000000000		SAMN18995143	7.8.34	Weissella cibaria
GCA_018993825.1	JAGXIZ000000000		SAMN18995118	3.8.44	Weissella cibaria
GCA_018993865.1	JAGXJA000000000		SAMN18994828	1.2.50	Weissella hellenica
GCA_018991665.1	JAGXJB000000000		SAMN18995137	3.2.24	Weissella paramesenteroides
GCA_032164335.1		2	SAMN37199271	1.2.20	Winslowiella toletana

SRA Data Details

Parameter	Value
Data volume, Gbases	74
Data volume, Mbytes	34212

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Lactiplantibacillus

Cucumber fermentation organisms

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