ID 174854 - BioProject

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Accession: PRJDB503 ID: 174854

Genome projects for evolutional studies of the family Acetobacteraceae

We are pursuing a research project to comprehend the evolutional status of the family Acetobacteraceae based on genome analyses. First 18 bacterial genomes were projected to read the genome DNA sequences. We will provide data of more bacterial genome and moreover transcriptome by mRNA sequencing.

Accession	PRJDB503
Type	Umbrella project
Organism	Acetobacteraceae[Taxonomy ID: 433] Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae
Publications	Higashiura N et al., "Draft Genomic DNA Sequence of the Facultatively Methylotrophic Bacterium Acidomonas methanolica type strain MB58.", FEMS Microbiol Lett, 2014 Feb 1;351(1):9-13
Grants	"Applied studies for biomass utilization based on genome analyses of acetic acid bacteria exhibiting specific metabolic traits." (Grant ID 2251022, Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan)
Submission	Registration date: 10-Sep-2012 Consortium of acetic acid bacteria genome project - Kinki University

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6919
WGS master	17
Genomic DNA	1
Protein Sequences	54490
Publications
PubMed	2
PMC	1
Other datasets
BioSample	18
Assembly	18

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

9
4
13

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_000963905.1	BAMU00000000	SAMD00036630	NBRC 14818	Acetobacter aceti NBRC 14818
GCA_000964205.1	BAMY00000000	SAMD00036634	JCM 7639T	Acetobacter orleanensis JCM 7639
GCA_000964345.1	BANA00000000	SAMD00036636	AIU301	Acidiphilium multivorum AIU301
GCA_000964365.1	BANB00000000	SAMD00036637	HS-AP3	Acidisphaera rubrifaciens HS-AP3
GCA_000964385.1	BANC00000000	SAMD00036638	101 = DSM 11237	Acidocella aminolytica 101 = DSM 11237
GCA_000617865.1	BAND00000000	SAMD00036639	MB58	Acidomonas methanolica NBRC 104435
GCA_000964445.1	BANG00000000	SAMD00036642	M-2	Gluconobacter frateurii M-2
GCA_000964465.1	BANH00000000	SAMD00036643	F149-1	Gluconobacter thailandicus F149-1 = NBRC 100600
GCA_000964485.1	BANI00000000	SAMD00036644	NBRC 3261	Komagataeibacter europaeus NBRC 3261
GCA_000964425.1	BANF00000000	SAMD00036641	TF2	Komagataeibacter intermedius TF2
GCA_000964505.1	BANJ00000000	SAMD00036645	NBRC 13693	Komagataeibacter xylinus NBRC 13693
GCA_000964405.1	BANE00000000	SAMD00036640	JCM 7643	Novacetimonas hansenii JCM 7643
GCA_000963885.1	BALE00000000	SAMD00036627	NBRC 103193	Tanticharoenia sakaeratensis NBRC 103193

This project encompasses the following 18 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Scaffolds
Contigs
Total

3
1
4

BioProject accession	Assembly level	Organism	Title
PRJDB505	Contigs	Acetobacter cibinongensis NRIC 0482	Acetobacter cibinongensis (Consortium of acetic acid...)
PRJDB506	Scaffolds	Acetobacter indonesiensis NRIC 0313	Acetobacter indonesiensis (Consortium of acetic acid...)
PRJDB507	Scaffolds	Acetobacter orientalis	Acetobacter orientalis (Consortium of acetic acid...)
PRJDB509	Scaffolds	Acetobacter syzygii	Acetobacter syzygii (Consortium of acetic acid...)

Phenotype or Genotype

BioProject accession	Organism	Title
PRJDB504	Acetobacter aceti NBRC 14818	Acetobacter aceti (Consortium of acetic acid...)
PRJDB508	Acetobacter orleanensis JCM 7639	Acetobacter orleanensis (Consortium of acetic acid...)
PRJDB510	Acidiphilium multivorum AIU301	Acidiphilium multivorum (Consortium of acetic acid...)
PRJDB511	Acidisphaera rubrifaciens HS-AP3	Acidisphaera rubrifaciens (Consortium of acetic acid...)
PRJDB512	Acidocella aminolytica 101 = DSM 11237	Acidocella aminolytica (Consortium of acetic acid...)

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Genome projects for evolutional studies of the family Acetobacteraceae

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