Metagenome-assembled genome: SRR8387719_bin.22_met... - BioSample

Metagenome-assembled genome: SRR8387719_bin.22_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111499083; SRA: ERS13592847

Organism: Butyrivibrio fibrisolvens
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Butyrivibrio

Attributes

broad-scale environmental context	Sheep digestive system
collection date	2016-02-18
environmental medium	Rumen content
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	sheep gut metagenome
project name	Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model.
sample name	SRR8387719_bin.22_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-10-21
ENA-LAST-UPDATE	2022-10-21
External Id	SAMEA111499083
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-10-21T20:21:53Z
INSDC last update	2022-10-21T20:21:53Z
INSDC status	public
Submitter Id	SRR8387719_bin.22_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	70.7
completeness software	CheckM
contamination score	1.89
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Rumen
metagenomic source	sheep gut metagenome
sample derived from	SAMN10688360
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Butyrivibrio;s__Butyrivibrio fibrisolvens
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR8387719 of study SRP175061.

BioProject: PRJEB56573
Retrieve all samples from this project

Submission: EBI; 2022-10-22

Accession:: SAMEA111499083
ID:: 31414774

BioProject Nucleotide

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

Metagenome-assembled genome: SRR8387719_bin.22_metaWRAP_v1.3_MAG

Supplemental Content

Related information

Recent activity