Metagenome-assembled genome: SRR10912536_bin.9_met... - BioSample

Metagenome-assembled genome: SRR10912536_bin.9_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111560485; SRA: ERS13670342

Organism: Butyrivibrio fibrisolvens
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Butyrivibrio

Attributes

broad-scale environmental context	Sheep digestive system
collection date	2016-12-15
environmental medium	Rumen content
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	sheep gut metagenome
project name	Disruption of the ruminal homeostasis by malnutrition involved in systemic ruminal microbiota-host interactions in a pregnant sheep model
sample name	SRR10912536_bin.9_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-11-14
ENA-LAST-UPDATE	2022-11-14
External Id	SAMEA111560485
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-11-14T15:53:27Z
INSDC last update	2022-11-14T15:53:27Z
INSDC status	public
Submitter Id	SRR10912536_bin.9_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	87.7
completeness software	CheckM
contamination score	1.05
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Rumen
metagenomic source	sheep gut metagenome
sample derived from	SAMN13866100
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Butyrivibrio;s__Butyrivibrio fibrisolvens
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR10912536 of study SRP242661.

BioProject: PRJEB56652
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Submission: EBI; 2022-11-15

Accession:: SAMEA111560485
ID:: 31733705

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Metagenome-assembled genome: SRR10912536_bin.9_metaWRAP_v1.3_MAG

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