ERS11712860

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Result Filters

Organism: Sphingomonas paucimobilis
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas

Attributes

collection date	2018-04-20
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB52406
sample name	HRS-ES8-bin-109
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-13
ENA-LAST-UPDATE	2023-04-13
External Id	SAMEA110052347
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2023-04-13T16:27:01Z
INSDC last update	2023-04-13T16:27:01Z
INSDC status	public
Submitter Id	HRS-ES8-bin-109
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 49,69,89,109,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	87.83
completeness software	checkm
contamination score	1.45
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
metagenomic source	freshwater metagenome
sample derived from	ERS11712860
scientific_name	Sphingomonas paucimobilis
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach