Metagenome-Assembled Genome: ERR9354184_bin.38_Met... - BioSample

Metagenome-Assembled Genome: ERR9354184_bin.38_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114061243; SRA: ERS16045110

Organism: Lactobacillus johnsonii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	Human digestive system
collection date	not provided
environmental medium	faeces
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	INSPIRE is a study of duodenal mucosal resurfacing, through intestinal ablation, to investigate its potential for treatment of type 2 diabetes mellitus. In this study, the microbiome before and after intestinal ablation was studied in combination with a range of clinical markers.
sample name	ERR9354184_bin.38_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-13T16:22:49Z
ENA-LAST-UPDATE	2023-07-13T16:22:49Z
External Id	SAMEA114061243
INSDC center name	EMG
INSDC first public	2023-07-13T16:22:49Z
INSDC last update	2023-07-13T16:22:49Z
INSDC status	public
Submitter Id	ERR9354184_bin.38_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	99.22
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMEA13060055
scientific_name	Lactobacillus johnsonii
sequencing method	unspecified
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9354184 of study ERP135599.

BioProject: PRJEB62838
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Submission: EBI; 2023-07-17

Accession:: SAMEA114061243
ID:: 36477388

BioSample

National Center for Biotechnology Information

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Metagenome-Assembled Genome: ERR9354184_bin.38_MetaWRAP_v1.3_MAG

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