Metagenome-Assembled Genome: SRR17382081_bin.31_Me... - BioSample

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Metagenome-Assembled Genome: SRR17382081_bin.31_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114066228; SRA: ERS16049644

Organism: Bifidobacterium animalis
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Attributes

broad-scale environmental context	Human digestive system
collection date	2019-12
environmental medium	faeces
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	The analysis of human gut virome of a previously unexplored ethnic population through metagenomics of faecal samples collected from individuals residing in Northern India.
sample name	SRR17382081_bin.31_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-13T20:35:02Z
ENA-LAST-UPDATE	2023-07-13T20:35:02Z
External Id	SAMEA114066228
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-13T20:35:02Z
INSDC last update	2023-07-13T20:35:02Z
INSDC status	public
Submitter Id	SRR17382081_bin.31_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	98.15
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMN24450286
scientific_name	Bifidobacterium animalis
sequencing method	Illumina HiSeq X
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR17382081 of study SRP352907.