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BioSample

National Center for Biotechnology Information

Result Filters

Metagenome-Assembled Genome: ERR10149267_bin.18_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114096320; SRA: ERS16080161

Organism: Lactobacillus helveticus
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	Human digestive system
collection date	2020-04-03
environmental medium	faeces
geographic location	South Korea
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	whole metagenomic sequencing for child gut microbiome
sample name	ERR10149267_bin.18_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-18T16:27:41Z
ENA-LAST-UPDATE	2023-07-18T16:27:41Z
External Id	SAMEA114096320
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-18T16:27:41Z
INSDC last update	2023-07-18T16:27:41Z
INSDC status	public
Submitter Id	ERR10149267_bin.18_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	96.32
completeness software	CheckM
contamination score	0.03
geographic location (latitude)	0.0
geographic location (longitude)	0.0
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMEA111279342
scientific_name	Lactobacillus helveticus
sequencing method	Illumina HiSeq 4000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus helveticus
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10149267 of study ERP140641.