Metagenome-Assembled Genome: SRR13494478_bin.30_Me... - BioSample

Metagenome-Assembled Genome: SRR13494478_bin.30_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114096519; SRA: ERS16080360

Organism: Lactobacillus helveticus
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	Human digestive system
collection date	2018-01-17
environmental medium	faeces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	Fecal microbiota transplantation (FMT) is an effective therapy for recurrent Clostridioides difficile infection (CDI). However, the overall mechanisms of FMT have not been comprehensively elucidated, and the safety of FMT has recently become a serious concern because of the occurrence of drug-resistant bacteremia transmitted by FMT. We investigated whether the functional restoration of the bacteriomes and viromes by FMT could be an indicator of successful FMT.
sample name	SRR13494478_bin.30_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-18T16:27:39Z
ENA-LAST-UPDATE	2023-07-18T16:27:39Z
External Id	SAMEA114096519
INSDC center name	EMG
INSDC first public	2023-07-18T16:27:39Z
INSDC last update	2023-07-18T16:27:39Z
INSDC status	public
Submitter Id	SRR13494478_bin.30_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	97.65
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	42.2
geographic location (longitude)	-71.06
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMN17393296
scientific_name	Lactobacillus helveticus
sequencing method	Illumina HiSeq 2500
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus helveticus
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR13494478 of study SRP302623.

BioProject: PRJEB63401
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Submission: EBI; 2023-07-21

Accession:: SAMEA114096519
ID:: 36671553

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Metagenome-Assembled Genome: SRR13494478_bin.30_MetaWRAP_v1.3_MAG

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