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Metagenome-Assembled Genome: SRR13494527_bin.5_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114096766; SRA: ERS16080607
Organism
Lactiplantibacillus pentosus
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus
Attributes
broad-scale environmental contextHuman digestive system
collection date2018-01-17
environmental mediumfaeces
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameFecal microbiota transplantation (FMT) is an effective therapy for recurrent Clostridioides difficile infection (CDI). However, the overall mechanisms of FMT have not been comprehensively elucidated, and the safety of FMT has recently become a serious concern because of the occurrence of drug-resistant bacteremia transmitted by FMT. We investigated whether the functional restoration of the bacteriomes and viromes by FMT could be an indicator of successful FMT.
sample nameSRR13494527_bin.5_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-18T16:27:39Z
ENA-LAST-UPDATE2023-07-18T16:27:39Z
External IdSAMEA114096766
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-18T16:27:39Z
INSDC last update2023-07-18T16:27:39Z
INSDC statuspublic
Submitter IdSRR13494527_bin.5_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score99.07
completeness softwareCheckM
contamination score2.62
geographic location (latitude)42.2
geographic location (longitude)-71.06
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMN17393296
scientific_nameLactiplantibacillus pentosus
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus pentosus
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR13494527 of study SRP302623.

BioProject
PRJEB63401
Retrieve all samples from this project

Submission
EBI; 2023-07-21
Accession:
SAMEA114096766
ID:
36671800

Nucleotide

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