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BioSample

National Center for Biotechnology Information

Result Filters

Metagenome-Assembled Genome: SRR16280066_bin.15_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114122569; SRA: ERS16103288

Organism: Bifidobacterium animalis
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Attributes

broad-scale environmental context	Human digestive system
collection date	2019-05-01/2020-10-30
environmental medium	faeces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	Parkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation.
sample name	SRR16280066_bin.15_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-20T12:20:53Z
ENA-LAST-UPDATE	2023-07-20T12:20:53Z
External Id	SAMEA114122569
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-20T12:20:53Z
INSDC last update	2023-07-20T12:20:53Z
INSDC status	public
Submitter Id	SRR16280066_bin.15_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	37.51
geographic location (longitude)	122.12
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMN22185195
scientific_name	Bifidobacterium animalis
sequencing method	Illumina HiSeq 2500
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16280066 of study SRP340671.