Warning: The NCBI web site requires JavaScript to function. more...

BioSample

National Center for Biotechnology Information

Organism: Halobacterium salinarum
cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium

Attributes

broad-scale environmental context	marine biome (ENVO:00000447)
collection date	2017-09-19
environmental medium	sea water (ENVO:00002149 )
geographic location	Arctic Ocean
isolation source	MAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at salinity of 33.1 PSU
project name	Beaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample name	CB9_331.39
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-10-28T00:34:18Z
ENA-LAST-UPDATE	2023-10-28T00:34:18Z
External Id	SAMEA114238405
INSDC center name	Concordia University
INSDC first public	2023-10-28T00:34:18Z
INSDC last update	2023-10-28T00:34:18Z
INSDC status	public
Submitter Id	CB9_331.39
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Spades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parameters	Default parameters; minimum scaffold length 2500 bp
binning software	Metabat2 v.2.12.1
completeness score	49.67
completeness software	CheckM v.1.0.7
contamination score	0.65
geographic location (latitude)	77.9972
geographic location (longitude)	149.9302
local environmental context	1000m depth (ENVO:XXXXXXXX)
metagenomic source	aquatic metagenome
sample derived from	ERS15586169
scientific_name	Halobacterium salinarum
taxonomic identity marker	Multi-marker approach