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BioSample

National Center for Biotechnology Information

Organism: Halobacterium salinarum
cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium

Attributes

broad-scale environmental context	marine biome (ENVO:00000447)
collection date	2017-09-15
environmental medium	sea water (ENVO:00002149 )
geographic location	Arctic Ocean
isolation source	MAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at salinity of 32.3 PSU
project name	Beaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample name	CBN3_323.46
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-10-28T00:34:18Z
ENA-LAST-UPDATE	2023-10-28T00:34:18Z
External Id	SAMEA114238605
INSDC center name	Concordia University
INSDC first public	2023-10-28T00:34:18Z
INSDC last update	2023-10-28T00:34:18Z
INSDC status	public
Submitter Id	CBN3_323.46
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Spades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parameters	Default parameters; minimum scaffold length 2500 bp
binning software	Metabat2 v.2.12.1
completeness score	46.08
completeness software	CheckM v.1.0.7
contamination score	0
geographic location (latitude)	80.9505
geographic location (longitude)	132.1397
local environmental context	1000m depth (ENVO:XXXXXXXX)
metagenomic source	aquatic metagenome
sample derived from	ERS15586159
scientific_name	Halobacterium salinarum
taxonomic identity marker	Multi-marker approach