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BioSample

National Center for Biotechnology Information

Identifiers: BioSample: SAMN06457647; Sample name: Limnobacter sp. UBA882; SRA: SRS2031290

Organism: Limnobacter sp. UBA882
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter; unclassified Limnobacter

Attributes

collection date	not applicable
geographic location	missing
isolate	UBA882
isolation source	saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome source	marine metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in ERX555976 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	85.56%
contamination_estimated	1.09%
environmental_sample	true
genome_coverage	10.59
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR599053.

Description: Uncultivated genome recovered from an assembly of the ERX555976 metagenome.

Uncultivated Limnobacter sp. UBA882 genome recovered from ERX555976
Uncultivated Limnobacter sp. UBA882 genome recovered from ERX555976

biosample
txid1946764[Organism:noexp] (1)
BioSample
TPA_asm: Burkholderia vietnamiensis, LMG 10929, WGS project CADETD010000000 data...
TPA_asm: Burkholderia vietnamiensis, LMG 10929, WGS project CADETD010000000 data, contig: B_vietnamiensis_BCC0030_ERS785016_SC_contig000063, whole genome shotgun sequence
gi|1851612304|tpe|CADETD010000063.1

Nucleotide
384698[uid] (1)
Taxonomy

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