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Metagenome-assembled genome: SRR873605_bin.145_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110745970; SRA: ERS12843494
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
broad-scale environmental contextSheep digestive system
collection datenot provided
environmental mediumRumen content
geographic locationNew Zealand
investigation typemetagenome-assembled genome
isolation sourcesheep gut metagenome
project nameRumen metagenome and metatranscriptome sequencing from low and high methane producing sheep.
sample nameSRR873605_bin.145_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-26
ENA-LAST-UPDATE2022-08-26
External IdSAMEA110745970
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-08-26T00:20:11Z
INSDC last update2022-08-26T00:20:11Z
INSDC statuspublic
Submitter IdSRR873605_bin.145_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score52.59
completeness softwareCheckM
contamination score0.86
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextRumen
metagenomic sourcesheep gut metagenome
sample derived fromSAMN02144231
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR873605 of study SRP022254.

BioProject
PRJEB22623 gut metagenome metagenomic assembly
Retrieve all samples from this project

Submission
EBI; 2022-08-27
Accession:
SAMEA110745970
ID:
30539949

BioProject Nucleotide

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