O49_L4_304304_idba_bin.189

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Result Filters

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

broad-scale environmental context	Gastrointestinal_tract_microbiota
collection date	not provided
environmental medium	Caecal_contents
geographic location	Ethiopia
isolation source	metagenome
project name	PRJEB57055
sample name	O49_L4_304304_idba_bin.189
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-06-12
ENA-LAST-UPDATE	2023-06-12
External Id	SAMEA112661944
INSDC center alias	Addis Ababa University
INSDC center name	addis ababa university
INSDC first public	2023-06-12T16:19:59Z
INSDC last update	2023-06-12T16:19:59Z
INSDC status	public
Submitter Id	O49_L4_304304_idba_bin.189
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	idba-ud
binning parameters	--minContigLength 2000, --minContigDepth 2
binning software	metabat2
completeness score	94.51
completeness software	checkm
contamination score	0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Gallus gallus
metagenomic source	Gallus gallus
sample derived from	ERS14251781
scientific_name	uncultured Alphaproteobacteria bacterium
sequencing method	Novaseq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG derived from the metagenomic sample ERS14251781

BioProject: PRJEB57055 Altitude-dependent climate zones shape the microbiome diversity of the scavenging indigenous chicken in Ethiopia
Retrieve all samples from this project