Batch4_idba_bin.855

Identifiers: BioSample: SAMEA112662094; SRA: ERS14659639

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

broad-scale environmental context	Gastrointestinal_tract_microbiota
collection date	not provided
environmental medium	Caecal_contents
geographic location	Ethiopia
isolation source	metagenome
project name	PRJEB57055
sample name	Batch4_idba_bin.855
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-06-12
ENA-LAST-UPDATE	2023-06-12
External Id	SAMEA112662094
INSDC center alias	Addis Ababa University
INSDC center name	addis ababa university
INSDC first public	2023-06-12T16:20:01Z
INSDC last update	2023-06-12T16:20:01Z
INSDC status	public
Submitter Id	Batch4_idba_bin.855
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	--minContigLength 2000, --minContigDepth 2
binning software	metabat2
completeness score	93.24
completeness software	checkm
contamination score	2.39
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Gallus gallus
metagenomic source	Gallus gallus
sample derived from	ERS14251726,ERS14251727,ERS14251728,ERS14251729,ERS14251730,ERS14251731,ERS14251732,ERS14251733,ERS14251734,ERS14251735,ERS14251736,ERS14251737,ERS14251738,ERS14251739,ERS14251740,ERS14251741,ERS14251742,ERS14251743,ERS14251744,ERS14251745,ERS14251746,ERS14251747,ERS14251748,ERS14251749,ERS14251750,ERS14251751,ERS14251752,ERS14251753,ERS14251754,ERS14251755,ERS14251755,ERS14251756,ERS14251757,ERS14251758,ERS14251759,ERS14251760,ERS14251761,ERS14251762,ERS14251763,ERS14251764,ERS14251765,ERS14251766,ERS14251767,ERS14251769,ERS14251769,ERS14251770,ERS14251771,ERS14251772
scientific_name	uncultured bacterium
sequencing method	Novaseq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG derived from the metagenomic sample ERS14251726,ERS14251727,ERS14251728,ERS14251729,ERS14251730,ERS14251731,ERS14251732,ERS14251733,ERS14251734,ERS14251735,ERS14251736,ERS14251737,ERS14251738,ERS14251739,ERS14251740,ERS14251741,ERS14251742,ERS14251743,ERS14251744,ERS14251745,ERS14251746,ERS14251747,ERS14251748,ERS14251749,ERS14251750,ERS14251751,ERS14251752,ERS14251753,ERS14251754,ERS14251755,ERS14251755,ERS14251756,ERS14251757,ERS14251758,ERS14251759,ERS14251760,ERS14251761,ERS14251762,ERS14251763,ERS14251764,ERS14251765,ERS14251766,ERS14251767,ERS14251769,ERS14251769,ERS14251770,ERS14251771,ERS14251772

BioProject: PRJEB57055 Altitude-dependent climate zones shape the microbiome diversity of the scavenging indigenous chicken in Ethiopia
Retrieve all samples from this project

Submission: EBI; 2023-06-15

Accession:: SAMEA112662094
ID:: 35744145

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