SI.A33.metabat-bins.42

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Firmicutes bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; environmental samples

Attributes

broad-scale environmental context	Gastrointestinal_tract_microbiota
collection date	not provided
environmental medium	Caecal_contents
geographic location	Ethiopia
isolation source	metagenome
project name	PRJEB57055
sample name	SI.A33.metabat-bins.42
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-06-12
ENA-LAST-UPDATE	2023-06-12
External Id	SAMEA112663096
INSDC center alias	Addis Ababa University
INSDC center name	addis ababa university
INSDC first public	2023-06-12T16:20:06Z
INSDC last update	2023-06-12T16:20:06Z
INSDC status	public
Submitter Id	SI.A33.metabat-bins.42
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	-m 1500
binning software	metabat2
completeness score	87.64
completeness software	checkm
contamination score	0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Gallus gallus
metagenomic source	Gallus gallus
sample derived from	ERS14251630
scientific_name	uncultured Firmicutes bacterium
sequencing method	Novaseq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG derived from the metagenomic sample ERS14251630

BioProject: PRJEB57055 Altitude-dependent climate zones shape the microbiome diversity of the scavenging indigenous chicken in Ethiopia
Retrieve all samples from this project