CO.A73.metabat-bins.383

Identifiers: BioSample: SAMEA112663174; SRA: ERS14660719

Organism: Limosilactobacillus ingluviei
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus

Attributes

broad-scale environmental context	Gastrointestinal_tract_microbiota
collection date	not provided
environmental medium	Caecal_contents
geographic location	Ethiopia
isolation source	metagenome
project name	PRJEB57055
sample name	CO.A73.metabat-bins.383
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-06-12
ENA-LAST-UPDATE	2023-06-12
External Id	SAMEA112663174
INSDC center alias	Addis Ababa University
INSDC center name	addis ababa university
INSDC first public	2023-06-12T16:20:02Z
INSDC last update	2023-06-12T16:20:02Z
INSDC status	public
Submitter Id	CO.A73.metabat-bins.383
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	-m 1500
binning software	metabat2
completeness score	86.48
completeness software	checkm
contamination score	1
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Gallus gallus
metagenomic source	Gallus gallus
sample derived from	ERS14251695,ERS14251696,ERS14251704,ERS14251713,ERS14251732,ERS14251742,ERS14251744,ERS14251745,ERS14251746,ERS14251826,ERS14251827,ERS14251828,ERS14251829,ERS14251831,ERS14251646,ERS14251648,ERS14251649,ERS14251650,ERS14251651,ERS14251652,ERS14251653,ERS14251654,ERS14251692,ERS14251598,ERS14251599,ERS14251600,ERS14251601,ERS14251602,ERS14251603,ERS14251604,ERS14251605,ERS14251693,ERS14251694,ERS14251734,ERS14251735,ERS14251736,ERS14251737,ERS14251738,ERS14251739,ERS14251740,ERS14251741,ERS14251743,ERS14251824,ERS14251825,ERS14251830,ERS14251832,ERS14251833,ERS14251834,ERS14251835
scientific_name	Limosilactobacillus ingluviei
sequencing method	Novaseq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG derived from the metagenomic sample ERS14251695,ERS14251696,ERS14251704,ERS14251713,ERS14251732,ERS14251742,ERS14251744,ERS14251745,ERS14251746,ERS14251826,ERS14251827,ERS14251828,ERS14251829,ERS14251831,ERS14251646,ERS14251648,ERS14251649,ERS14251650,ERS14251651,ERS14251652,ERS14251653,ERS14251654,ERS14251692,ERS14251598,ERS14251599,ERS14251600,ERS14251601,ERS14251602,ERS14251603,ERS14251604,ERS14251605,ERS14251693,ERS14251694,ERS14251734,ERS14251735,ERS14251736,ERS14251737,ERS14251738,ERS14251739,ERS14251740,ERS14251741,ERS14251743,ERS14251824,ERS14251825,ERS14251830,ERS14251832,ERS14251833,ERS14251834,ERS14251835

BioProject: PRJEB57055 Altitude-dependent climate zones shape the microbiome diversity of the scavenging indigenous chicken in Ethiopia
Retrieve all samples from this project

Submission: EBI; 2023-06-15

Accession:: SAMEA112663174
ID:: 35745254

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