O56_L1_318318_idba_bin.55

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Result Filters

Organism: uncultured Treponema sp.
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; environmental samples

Attributes

broad-scale environmental context	Gastrointestinal_tract_microbiota
collection date	not provided
environmental medium	Caecal_contents
geographic location	Ethiopia
isolation source	metagenome
project name	PRJEB57055
sample name	O56_L1_318318_idba_bin.55
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-06-12
ENA-LAST-UPDATE	2023-06-12
External Id	SAMEA112663632
INSDC center alias	Addis Ababa University
INSDC center name	addis ababa university
INSDC first public	2023-06-12T16:20:06Z
INSDC last update	2023-06-12T16:20:06Z
INSDC status	public
Submitter Id	O56_L1_318318_idba_bin.55
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	idba-ud
binning parameters	--minContigLength 2000, --minContigDepth 2
binning software	metabat2
completeness score	100
completeness software	checkm
contamination score	0.7
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Gallus gallus
metagenomic source	Gallus gallus
sample derived from	ERS14251789
scientific_name	uncultured Treponema sp.
sequencing method	Novaseq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG derived from the metagenomic sample ERS14251789

BioProject: PRJEB57055 Altitude-dependent climate zones shape the microbiome diversity of the scavenging indigenous chicken in Ethiopia
Retrieve all samples from this project

O56_L1_318318_idba_bin.55
O56_L1_318318_idba_bin.55

biosample
MAG: Lactobacillus johnsonii isolate S-Fe17_120417.1_1677756536 genome assembly,...
MAG: Lactobacillus johnsonii isolate S-Fe17_120417.1_1677756536 genome assembly, contig: NODE_971_length_26241_cov_3.292064, whole genome shotgun sequence
gi|2461597213|emb|CASMOM010000016.1 |WGS:CASMOM01|NODE_971_length_26241_cov_3.292064

Nucleotide

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