U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome: ERR9578298_bin.36_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114063516; SRA: ERS16047379
Organism
uncultured Prevotella sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples
Attributes
broad-scale environmental contextHuman digestive system
collection date2018
environmental mediumfaeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameChanges in intestinal microbiome composition have been described in animal models of Alzheimer`s disease (AD) and AD patients. Here we investigated how well taxonomic and functional intestinal microbiome data can be used to discriminate between amyloid-positive AD patients and cognitively healthy elderly controls.
sample nameERR9578298_bin.36_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T20:35:00Z
ENA-LAST-UPDATE2023-07-13T20:35:00Z
External IdSAMEA114063516
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T20:35:00Z
INSDC last update2023-07-13T20:35:00Z
INSDC statuspublic
Submitter IdERR9578298_bin.36_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score98.68
completeness softwareCheckM
contamination score0.0
geographic location (latitude)48.5216364
geographic location (longitude)9.0576448
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA13959653
scientific_nameuncultured Prevotella sp.
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9578298 of study ERP132305.

BioProject
PRJEB62820
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114063516
ID:
36479578

Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center