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Metagenome-Assembled Genome: ERR9578307_bin.62_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114063594; SRA: ERS16047457
Organism
uncultured Porphyromonadaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; environmental samples
Attributes
broad-scale environmental contextHuman digestive system
collection date2018
environmental mediumfaeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameChanges in intestinal microbiome composition have been described in animal models of Alzheimer`s disease (AD) and AD patients. Here we investigated how well taxonomic and functional intestinal microbiome data can be used to discriminate between amyloid-positive AD patients and cognitively healthy elderly controls.
sample nameERR9578307_bin.62_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T20:35:03Z
ENA-LAST-UPDATE2023-07-13T20:35:03Z
External IdSAMEA114063594
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T20:35:03Z
INSDC last update2023-07-13T20:35:03Z
INSDC statuspublic
Submitter IdERR9578307_bin.62_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score98.47
completeness softwareCheckM
contamination score0.38
geographic location (latitude)48.5216364
geographic location (longitude)9.0576448
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA13959631
scientific_nameuncultured Porphyromonadaceae bacterium
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9578307 of study ERP132305.

BioProject
PRJEB62820
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114063594
ID:
36479656

Nucleotide

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