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Metagenome-Assembled Genome: SRR18940287_bin.35_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114064634; SRA: ERS16048497
Organism
Haemophilus parainfluenzae
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus
Attributes
broad-scale environmental contextHuman digestive system
collection date2020
environmental mediumfaeces
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project namegut metagenome of 19 non-habitual milk consumers with gastro-intestinal discomfort upon cow's milk consumption (NHMC) and 20 habitual milk consumers without GID (HMC), participating in a gut permeability and a milk load
sample nameSRR18940287_bin.35_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T20:34:59Z
ENA-LAST-UPDATE2023-07-13T20:34:59Z
External IdSAMEA114064634
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T20:34:59Z
INSDC last update2023-07-13T20:34:59Z
INSDC statuspublic
Submitter IdSRR18940287_bin.35_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score57.74
completeness softwareCheckM
contamination score3.51
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMN27917755
scientific_nameHaemophilus parainfluenzae
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus parainfluenzae
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR18940287 of study SRP372536.

BioProject
PRJEB63152
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114064634
ID:
36480697

Nucleotide

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