Metagenome-assembled genome: SRR1790676_binner12_R... - BioSample

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Metagenome-assembled genome: SRR1790676_binner12_Refined_29

Identifiers: BioSample: SAMEA115288946; Sample name: SRR1790676_binner12_Refined_29; SRA: ERS18258202

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

broad-scale environmental context	aqua
collection date	2011-05-19
environmental medium	amazon
investigation type	metagenome-assembled genome
project name	This project focuses on the Amazon River-to-tropical Atlantic Ocean continuum because of both its immense scale and its apparent sensitivity to climate variability and anthropogenic forcing. The riverâ€™s effect on the ocean depends not only on the river hydrology, but what the river carries and how those components are modified during transit from their terrestrial or aquatic origins. We brought together limnologists and oceanographers in an integrated project to improve our understanding of carbon exchange between the atmosphere and this tropical river continuum, focusing on the lower reach, nearshore, and offshore tropical Atlantic, with the goal of improving predictive capabilities under differing climate change scenarios.
geographic location	Brazil
isolation source	aquatic metagenome
assembly software	spades_v3.11.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured bacterium
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMN03252813
geographic location (longitude)	-55.525717 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	70.64 %
contamination score	2.03 %
geographic location (latitude)	-1.919017 DD
scientific_name	uncultured bacterium
local environmental context	water
metagenomic source	aquatic metagenome
sequencing method	Illumina HiSeq 2500
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1790676 of study SRP039390.