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Metagenome-assembled genome: ERR1474584_bin.27_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14083598; SRA: ERS11686732
Organism
uncultured Candidatus Saccharibacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; environmental samples
Attributes
collection date2014-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationPhilippines
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameMetagenomic sequencing of saliva samples from individuals with hunter-gatherer or agriculturalist lifestyles from locations in the Philippines.
sample nameERR1474584_bin.27_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14083598
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:27Z
INSDC last update2023-01-03T00:33:27Z
INSDC statuspublic
Submitter IdERR1474584_bin.27_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes genome assembler v3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score62.24
completeness softwareCheckM
contamination score0.57
geographic location (latitude)12.9
geographic location (longitude)121.8
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA4031772
scientific_nameuncultured Candidatus Saccharibacteria bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1474584 of study ERP016024.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14083598
ID:
32560214

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