U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: ERR1474584_bin.55_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14083599; SRA: ERS11686733
Organism
uncultured Rothia sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; environmental samples
Attributes
collection date2014-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationPhilippines
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameMetagenomic sequencing of saliva samples from individuals with hunter-gatherer or agriculturalist lifestyles from locations in the Philippines.
sample nameERR1474584_bin.55_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14083599
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:27Z
INSDC last update2023-01-03T00:33:27Z
INSDC statuspublic
Submitter IdERR1474584_bin.55_CONCOCT_v1.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareSPAdes genome assembler v3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.0
completeness softwareCheckM
contamination score2.33
geographic location (latitude)12.9
geographic location (longitude)121.8
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA4031772
scientific_nameuncultured Rothia sp.
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1474584 of study ERP016024.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14083599
ID:
32560215

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center