Metagenome-assembled genome: ERR1474612_bin.46_CON... - BioSample

Metagenome-assembled genome: ERR1474612_bin.46_CONCOCT_v1.1_MAG

Organism: Oribacterium parvum
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Oribacterium

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Metagenomic sequencing of saliva samples from individuals with hunter-gatherer or agriculturalist lifestyles from locations in the Philippines.
sample name	ERR1474612_bin.46_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14083606
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:30Z
INSDC last update	2023-01-03T00:33:30Z
INSDC status	public
Submitter Id	ERR1474612_bin.46_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes genome assembler v3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.08
completeness software	CheckM
contamination score	1.29
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMN00146343
scientific_name	Oribacterium parvum
sequencing method	Illumina Genome Analyzer IIx
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1474612 of study ERP016024.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
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