Metagenome-assembled genome: ERR260190_bin.42_CONC... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Gut metagenome in European women with normal, impaired and diabetic glucose control
sample name	ERR260190_bin.42_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14084042
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:38Z
INSDC last update	2023-01-03T00:33:38Z
INSDC status	public
Submitter Id	ERR260190_bin.42_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.2
completeness software	CheckM
contamination score	0.87
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMEA1906422
scientific_name	uncultured Clostridia bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR260190 of study ERP002469.