Metagenome-assembled genome: ERR2764840_bin.3_CONC... - BioSample

Metagenome-assembled genome: ERR2764840_bin.3_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14084158; SRA: ERS11687291

Organism: uncultured Solobacterium sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium; environmental samples

Attributes

collection date	2011-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Germany
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples).
sample name	ERR2764840_bin.3_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14084158
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:47Z
INSDC last update	2023-01-03T00:33:47Z
INSDC status	public
Submitter Id	ERR2764840_bin.3_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	49.3988
geographic location (longitude)	8.6724
metagenomic source	human gut metagenome
sample derived from	SAMEA4873308
scientific_name	uncultured Solobacterium sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764840 of study ERP110622.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission: EBI; 2023-01-04

Accession:: SAMEA14084158
ID:: 32560786

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Metagenome-assembled genome: ERR2764840_bin.3_CONCOCT_v1.1_MAG

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