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Metagenome-assembled genome: ERR525911_bin.6_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14084469; SRA: ERS11687602
Organism
uncultured Collinsella sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples
Attributes
collection date2008-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameThe gastrointestinal tracts of mammalians are sterile in utero and colonized by microorganisms immediately after delivery. The subsequent development of the infant gut microbiota involves a complex succession of microbes, driven by factors such as gestational age, mode of delivery, antibiotic use, hygiene, geographical zone and type of feeding.
sample nameERR525911_bin.6_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14084469
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:10Z
INSDC last update2023-01-03T00:33:10Z
INSDC statuspublic
Submitter IdERR525911_bin.6_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.10.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score91.74
completeness softwareCheckM
contamination score6.33
geographic location (latitude)40.416634
geographic location (longitude)-3.7037659
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA2580128
scientific_nameuncultured Collinsella sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR525911 of study ERP005989.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14084469
ID:
32561097

BioProject Nucleotide

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