Metagenome-assembled genome: SRR11615763_bin.102_C... - BioSample

Metagenome-assembled genome: SRR11615763_bin.102_CONCOCT_v1.1_MAG

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	2017-09-28
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Israel
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Carbapenemase-producing Enterobacteriaceae (CPE) infections lead to considerable morbidity and mortality. We assessed the potential of fecal microbiota transplantation (FMT) to eradicate CPE carriage and to explain failure or success through microbiome analyses.
sample name	SRR11615763_bin.102_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085434
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:10Z
INSDC last update	2023-01-03T00:33:10Z
INSDC status	public
Submitter Id	SRR11615763_bin.102_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	92.5
completeness software	CheckM
contamination score	4.75
geographic location (latitude)	32.83305
geographic location (longitude)	34.98571
metagenomic source	human gut metagenome
sample derived from	SAMN14734847
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11615763 of study SRP258728.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
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