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Metagenome-assembled genome: SRR12395647_bin.139_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14085459; SRA: ERS11688590
Organism
uncultured Bacteroidales bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; environmental samples
Attributes
collection date2015-08-20
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationCanada
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameMetagenomic sequencing of the gut from kidney stone patients and healthy controls
sample nameSRR12395647_bin.139_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14085459
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:18Z
INSDC last update2023-01-03T00:33:18Z
INSDC statuspublic
Submitter IdSRR12395647_bin.139_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.14.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score78.43
completeness softwareCheckM
contamination score3.46
geographic location (latitude)42.98
geographic location (longitude)-81.24
metagenomic sourcehuman gut metagenome
sample derived fromSAMN15661744
scientific_nameuncultured Bacteroidales bacterium
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12395647 of study SRP276112.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14085459
ID:
32562085

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