Metagenome-assembled genome: SRR2047620_bin.6_CONC... - BioSample

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Result Filters

Organism: Haemophilus parainfluenzae
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus

Attributes

collection date	2012-03-20
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Comparative analysis of the gut microbiomes of pediatric stem cell transplantation patients who do or do not develop intestinal graft-versus-host-disease (GVHD)
sample name	SRR2047620_bin.6_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085602
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:34Z
INSDC last update	2023-01-03T00:33:34Z
INSDC status	public
Submitter Id	SRR2047620_bin.6_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.89
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	32.8094
geographic location (longitude)	-96.8365
metagenomic source	human gut metagenome
sample derived from	SAMN03653683
scientific_name	Haemophilus parainfluenzae
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2047620 of study SRP058320.