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Metagenome-assembled genome: SRR2155332_bin.103_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14085604; SRA: ERS11688735
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; environmental samples
Attributes
collection date2011-05-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameTo gain more insight into the interconnection between microbiota, obesity and diet, we analyzed the metagenome of 16 patients following a weight-loss program based on a very low calorie inulin-enriched formula diet. In this longitudinal study we used shotgun sequencing of stool DNA to look at taxonomic and functional changes at different phases of the program. In 2 years we sequenced fecal samples at six time points, the baseline (before intervention, = T0), after diet intervention, (3 months later: T3), after reintroduction phase (T6), and three time points at the maintenance phase i.e. month 12 (T12), month 18 (T18) and month 24 (T24). In parallel, clinical parameters were monitored in order to establish potential relationships between microbiota and obesity-associated-disease particularly hypertension, insulin resistance, fatty liver and the metabolic syndrome. Moreover we analyzed the marker potential of microbial parameters for weight loss maintenance success.
sample nameSRR2155332_bin.103_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14085604
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:37Z
INSDC last update2023-01-03T00:33:37Z
INSDC statuspublic
Submitter IdSRR2155332_bin.103_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.10.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score65.8
completeness softwareCheckM
contamination score2.03
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromSAMN03922488
scientific_nameuncultured Clostridia bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2155332 of study SRP062282.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14085604
ID:
32562230

BioProject Nucleotide

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