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Metagenome-assembled genome: SRR3160452_bin.77_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14085678; SRA: ERS11688809
Organism
uncultured Collinsella sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples
Attributes
collection date2014-05-15
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameThis is a prospective cohort study using metagenomics to characterize gut microbiota populations of pediatric short bowel syndrome (SBS) patients with variable growth trajectories. Stool samples were collected from children with SBS and healthy controls over a three month period. Differences in gut bacterial populations were compared between healthy children and those with SBS (including a more in depth analysis of SBS children exhibiting poor and good growth).
sample nameSRR3160452_bin.77_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14085678
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:21Z
INSDC last update2023-01-03T00:33:21Z
INSDC statuspublic
Submitter IdSRR3160452_bin.77_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score98.39
completeness softwareCheckM
contamination score6.78
geographic location (latitude)32.8094
geographic location (longitude)-96.8365
metagenomic sourcehuman gut metagenome
sample derived fromSAMN04480494
scientific_nameuncultured Collinsella sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3160452 of study SRP069867.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14085678
ID:
32562304

BioProject Nucleotide

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