U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: SRR5024285_bin.159_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14085788; SRA: ERS11688919
Organism
uncultured Senegalimassilia sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Senegalimassilia; environmental samples
Attributes
collection date2015-02-12
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameDe novo reconstruction of bacterial genomes allows high-resolution tracking of microbial colonization in Fecal Microbiota Transplantation experiments
sample nameSRR5024285_bin.159_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14085788
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:40Z
INSDC last update2023-01-03T00:33:40Z
INSDC statuspublic
Submitter IdSRR5024285_bin.159_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score87.42
completeness softwareCheckM
contamination score1.88
geographic location (latitude)41.88
geographic location (longitude)-87.63
metagenomic sourcehuman gut metagenome
sample derived fromSAMN06018972
scientific_nameuncultured Senegalimassilia sp.
sequencing methodNextSeq 550
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5024285 of study SRP093449.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14085788
ID:
32562414

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center