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Metagenome-assembled genome: SRR5032267_bin.48_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14085790; SRA: ERS11688921
Organism
uncultured Phascolarctobacterium sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Negativicutes; Acidaminococcales; Acidaminococcaceae; Phascolarctobacterium; environmental samples
Attributes
collection date2015-04-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameTo reveal the relationship between the gut microbiome and ankylosing spondylitis, a quantitative metagenomics study that was based on deep shotgun sequencing of the gut microbial DNA from 211 Chinese individuals (97 patients and 104 healthy controls) was carried out. A total of 23,709 genes and 16 metagenomic species that were differentially abundant in the two groups were identified.
sample nameSRR5032267_bin.48_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14085790
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:40Z
INSDC last update2023-01-03T00:33:40Z
INSDC statuspublic
Submitter IdSRR5032267_bin.48_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score99.4
completeness softwareCheckM
contamination score0.9
geographic location (latitude)30.3
geographic location (longitude)120.2
metagenomic sourcehuman gut metagenome
sample derived fromSAMN06016382
scientific_nameuncultured Phascolarctobacterium sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5032267 of study SRP093506.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14085790
ID:
32562416

BioProject Nucleotide

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