Metagenome-assembled genome: SRR5519177_bin.3_CONC... - BioSample

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Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	2013-07-26
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Mexico
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Mexican childhood obesity
sample name	SRR5519177_bin.3_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085838
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:18Z
INSDC last update	2023-01-03T00:33:18Z
INSDC status	public
Submitter Id	SRR5519177_bin.3_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.58
completeness software	CheckM
contamination score	2.82
geographic location (latitude)	19.385086
geographic location (longitude)	-99.09375
metagenomic source	human gut metagenome
sample derived from	SAMN06885150
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5519177 of study SRP106687.