Metagenome-assembled genome: SRR5558142_bin.86_CON... - BioSample

Metagenome-assembled genome: SRR5558142_bin.86_CONCOCT_v1.1_MAG

Organism: uncultured Escherichia sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; environmental samples

Attributes

collection date	2014-11-04
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Spain
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	In this study, we performed a randomized, placebo-controlled, double-blind study in newly diagnosed T2D patients on a calorie-restricted diet and showed that metformin, but not calorie restriction, had rapid effects on the composition and function of the gut microbiota.
sample name	SRR5558142_bin.86_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085852
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:24Z
INSDC last update	2023-01-03T00:33:24Z
INSDC status	public
Submitter Id	SRR5558142_bin.86_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.07
geographic location (latitude)	41.99774
geographic location (longitude)	2.820006
metagenomic source	human gut metagenome
sample derived from	SAMN06233224
scientific_name	uncultured Escherichia sp.
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5558142 of study SRP100518.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
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