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Metagenome-assembled genome: SRR5580392_bin.88_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14085926; SRA: ERS11689057
Organism
Bacteroides intestinalis
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Attributes
collection date2014-11-04
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameIn this study, we performed a randomized, placebo-controlled, double-blind study in newly diagnosed T2D patients on a calorie-restricted diet and showed that metformin, but not calorie restriction, had rapid effects on the composition and function of the gut microbiota.
sample nameSRR5580392_bin.88_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14085926
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:13Z
INSDC last update2023-01-03T00:33:13Z
INSDC statuspublic
Submitter IdSRR5580392_bin.88_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.13.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score98.28
completeness softwareCheckM
contamination score9.56
geographic location (latitude)41.99774
geographic location (longitude)2.820006
metagenomic sourcehuman gut metagenome
sample derived fromSAMN06233224
scientific_nameBacteroides intestinalis
sequencing methodNextSeq 500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5580392 of study SRP100518.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14085926
ID:
32562552

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